Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g667 ATGGAAAGGAACAACATAATACAGAGATGGGAAGAGGTTTTGGACAAGATCAGTATTCCTTCACTGTTGCGGTCCATGGAGCCAGAAGATAGGATTGAATGGTTGGGAAGTGCACTTTCAGAGGCTCATCATGATAGGGATTCTCTCCAGCAGAAGATTGACAACCTCGAAACCTATTGTGGATCGCTAACGTCTGATCTGGCAGCGTTGCAGAGAAGGAAATCTGAGCTTGAAGCAGCTCTCCAAGCGGCCATCCATGAGAAAGAGAATCTTTTTGATAGGTTGGAGACTCTGACCTGTGAGCATGAAAAAGTTTCAGAGAATGCAGTCAAATTTAAACTTGAGAATGATAAGCTGCAGAATGAAGCAACTGATCTGCAGGAGAAATTAGTTGAGAAGCTTGGAAATGAGGAGCACATTCGCAGGATCGAAGATGATATAAGAAGATTGCAAGATTTAGTTAGTAATGTCTTGCAGGACCCTGGTTCAAAAGAATTGGGTTCTGGTGGCAGTGGTATTGAGTGCTTGGAAGAATTGCTAAGGAAGCTTATAGAGAATCACACTAGACTTTCCTTGGGGAAAACTGTGCTTAGGGATGGGATTGATGAATGCCATACCGAAAATGCTGATACATCTAGTGATGAACCAAGAGTCATAGATGCACCAGATACCAAGGATCTAGATGTGGTGGTTCTGAAGAAAGAACTGGAGGAGGCTTTGGGTGATCTGACTGAAGCGAAGTCGGAGAGAGATAGGTATATGGAGAAGATGCAATCTTTGCTGTGTGAAGTTGAAGCATTGGATCAGAAAAGGGAGGAGACGCAAGTTCTACTTGATCAGGAGGAGCAGAAGTCAGCTTCTTTGAGAGAGAAGTTAAATGTTGCAGTTAGAAAAGGGAAGTCCTTAGTGCAACATCGGGATAGTTTGAAACAAGCTGTTGAAGAGATGAATACCAAGGTGGAACACTTGAAATCTGAAATTGAACTTCGCGATAATGCTCTTGCAGAAAATCATTTGACAGAAGCTGAGGGCTATTTGCAGGAGAAAGGACATACTTTGAGTGTAATTTTGAACACTTTAGGTGACATTAATGTGGGTGTCGAATTTAGTGTTAATGATCCTGTTGACAAGTTGGGGCGAATTGGGAAACTATGTCATGATTTACATGCAGCTGTTGCTTCTTCAGAACATGAGTCTAAGAAATCTAAAAGAGCAGCGGAACTGCTCCTTGCAGAACTGAATGAAGTTCAAGAAAGAAATGACGCACTCCAAGATGAGCTAGCTAAAACTTGCAGTGAACTTTCTAAACTCTCCAAGGAAAGGGATGAAGCAGAAGCTTCCAAACTTGAAGCACTTTCAAGTCTCAAAAAACTAACCACTGTTCACTCTGAGGAAAGAAAGAACCAATTTTCTGCATTCATGGTGTTAAAATCTGATGTAGAGCATCTCAGAGAGAGCTTCTTTGATATTGACATTTTAATAGCTGATGTTTTCTCCAAGAACTTGGAATATTTTCACAGTCTGAAAGCTGGCATGGAATCATGTCTGAAACCAAGAGATGCTACTGATGTGGTTGGTGTGCCTCTCATCAGTTCACCTGGAGGCATTATTTCAAAAAGTTCAGAAAATAAGTTTCCGGTCCAGAACTTCCAGGCTGCAGATTGGTTCTCAGACTCTGAGGTAAAAGATCATTTTGATGAACATTTTATAGTTGAAAGTTGTAGCTTTATTGGGCAGCAGGTGCAAGAATGTTCAAAAGAAATTGGTTCCCTTAGAGAAAAATTACACAGACATTCAATTTCATTACATGAAGCAGCTCAAAGTCTATCTGCACTAATGGGTGTTATTCATGGAGATATGAATTCACAAAGGGAGTCATTTGAATTCATGAAGAGAGAACTTTCACGTTTAGAGTCAATGGAAAAAGAAAAAGATATGGAACTTGTTGCCATGAGGAGAAACCAGGGCTTGCTTTTTGAATCATGTACTGCTTCAATTATGGCAATTGAAAATAGGAAGGCCCAACTGGGTGGAAATGGTGTAGTTGCTCGGGATCTGGGTATTAACTTGTCTAGTGATGAAGGAAATTCTTTTGGTGGGAACGCCCTTTTCTCCTCTGAGGAAGGTATTAAAACTGTGGCAGAGAGATTATTATTAGCAGTGAATGATTTTGCCAGTATGCAAACCGAGATTCTAGATGATAGCCAAAAGGACATGAAAGCTAGAATAGCAGACTTGCAGACAGAGCTACAGGAGAAGGACATCCAAAAAGAGAGGATCTGTATGGAGCTTGTAAGTCAAATTAGGCAAGCTGAAGCTACTGCACTGGGCTACTCAACAGATCTTCAATCTGCAAATACTCAGGTACATGATTTGGAGAAGCAGGTGGAAGTGATGGAGAAAGAAAGGAATGCACTGGAGCAGAGAATAAAAGATCTTCAAGATGGGGAAGCTGCCTCAAAAGAGTTACAGGAGAAGGTCAAATCACTGGCTGATGTGGTAGCCGCAAAAGAGCAAGAAATCGAAGCCCTGATGCAAGCGCTTGATGAGGAGGAGGCCCAGATGGAAGACTTGACAAACAAGATTGAGGAATTGGGAAAAGAAGTGCAACAAAAGAATATAGATTTACAGAACCTTGAAGCTTCTCGTGGAAAGGCTTTGAAAAAGCTTTCTGTCACTGTGAGCAAGTTTGATGAGCTTCACCATCTGTCTGGAAGCCTCCTTGCTGAGGTTGAAAAGCTTCAGTCACAATTGCAGGATCGGGATGTAGAGATCTCTTTCTTAAGGCAGGAGGTCACTAGATGCACAAATGATGTTCTTGTTTCATCACAGATGAACAGCAAGAGAAATTCAGAGGAGATTAATGAGTTGTTGACATGCTTGGACCCACTTATTTCCCCGGCCCAATTACATGATGTGCTTCATGATGATAAGAAGAGTATTGGTGTTCATGAATACAAAGAGATACTGAAGAGGCAAATTGCATCTATTGTATCTGAATTGGAGGATCTACGGGCAGTGGCTCAAAGCAAGGATGCATTGTTGCAAGCAGAAAGGAGTAAAGTAGAAGAGTTATTACGGAAAGGAGAAACTCTTGAAAATTCTTTACGTGAGAAGGAATCTCAATTGACTTTGCTTCAAGATGTGGGGGATTCTGGACAGACAACTAGTATGAGCTCTGAAATTGTCGAAGTTAAACCAGTGATAAGCAAATGGGCAGCACCTGGGTCATCCATTACACCTCAAGTCCGCAGTTTACGCAAAGGCAATAATGATCAAGTAGCTATTGCTATAGATATGGATCCTGGCAGTAGTAATAGGTTAGAAGATGAAGATGATGATAAAGTTCATGGTTTCAAGTCACTCACCACATCGAGAATAGTCCCAAGATTTACAAGACCTGTTACCGACATGATTGATGGCCTGTGGGTTTCTTGTGATCGGGCATTAATGCGTCAACCTGCTTTACGGCTTGGTATCATAATCTATTGGGCTGTAATGCATGCACTTCTTGCAACATTTGTAGTTTGA 3531 41.4 MERNNIIQRWEEVLDKISIPSLLRSMEPEDRIEWLGSALSEAHHDRDSLQQKIDNLETYCGSLTSDLAALQRRKSELEAALQAAIHEKENLFDRLETLTCEHEKVSENAVKFKLENDKLQNEATDLQEKLVEKLGNEEHIRRIEDDIRRLQDLVSNVLQDPGSKELGSGGSGIECLEELLRKLIENHTRLSLGKTVLRDGIDECHTENADTSSDEPRVIDAPDTKDLDVVVLKKELEEALGDLTEAKSERDRYMEKMQSLLCEVEALDQKREETQVLLDQEEQKSASLREKLNVAVRKGKSLVQHRDSLKQAVEEMNTKVEHLKSEIELRDNALAENHLTEAEGYLQEKGHTLSVILNTLGDINVGVEFSVNDPVDKLGRIGKLCHDLHAAVASSEHESKKSKRAAELLLAELNEVQERNDALQDELAKTCSELSKLSKERDEAEASKLEALSSLKKLTTVHSEERKNQFSAFMVLKSDVEHLRESFFDIDILIADVFSKNLEYFHSLKAGMESCLKPRDATDVVGVPLISSPGGIISKSSENKFPVQNFQAADWFSDSEVKDHFDEHFIVESCSFIGQQVQECSKEIGSLREKLHRHSISLHEAAQSLSALMGVIHGDMNSQRESFEFMKRELSRLESMEKEKDMELVAMRRNQGLLFESCTASIMAIENRKAQLGGNGVVARDLGINLSSDEGNSFGGNALFSSEEGIKTVAERLLLAVNDFASMQTEILDDSQKDMKARIADLQTELQEKDIQKERICMELVSQIRQAEATALGYSTDLQSANTQVHDLEKQVEVMEKERNALEQRIKDLQDGEAASKELQEKVKSLADVVAAKEQEIEALMQALDEEEAQMEDLTNKIEELGKEVQQKNIDLQNLEASRGKALKKLSVTVSKFDELHHLSGSLLAEVEKLQSQLQDRDVEISFLRQEVTRCTNDVLVSSQMNSKRNSEEINELLTCLDPLISPAQLHDVLHDDKKSIGVHEYKEILKRQIASIVSELEDLRAVAQSKDALLQAERSKVEELLRKGETLENSLREKESQLTLLQDVGDSGQTTSMSSEIVEVKPVISKWAAPGSSITPQVRSLRKGNNDQVAIAIDMDPGSSNRLEDEDDDKVHGFKSLTTSRIVPRFTRPVTDMIDGLWVSCDRALMRQPALRLGIIIYWAVMHALLATFVV* 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9011203 9019599 - Vvi4g667 Vvi4g667 785446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g667 1176 Coils Coil 620 640 - -
Vvi4g667 1176 Coils Coil 229 298 - -
Vvi4g667 1176 Coils Coil 987 1007 - -
Vvi4g667 1176 Pfam Uso1 / p115 like vesicle tethering protein, C terminal region 766 871 IPR006955 GO:0006886|GO:0016192
Vvi4g667 1176 Coils Coil 782 882 - -
Vvi4g667 1176 PANTHER - 1 1176 - -
Vvi4g667 1176 Coils Coil 736 756 - -
Vvi4g667 1176 Coils Coil 911 931 - -
Vvi4g667 1176 Gene3D - 703 902 - -
Vvi4g667 1176 Coils Coil 399 447 - -
Vvi4g667 1176 Coils Coil 306 326 - -
Vvi4g667 1176 Coils Coil 140 160 - -
Vvi4g667 1176 Coils Coil 39 136 - -
Vvi4g667 1176 PANTHER NUCLEOPORIN 1 1176 - -
Vvi4g667 1176 Coils Coil 1015 1042 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g667 - - - vvi:100260617 2201.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed13g2097 . . Cma09g00531 . . . . . Bhi09g02377 Tan01g3740 Cmetu04g3258 . Hepe01g2093 Mch11g0631 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005999 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 39