Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g668 ATGGCCCCTGATATTGATGCGGAAGCCATTGATCCACCTTCAATGCCCCTTTCACCCAAGATGGGCAAAGTTGAAAAGTTTTCGACTGATTATACTGAGTTGCCACTGGAGGGTTCAGGGGTTGGTGAAAATGATGTTGATTCCTCTGTTTCAAACAAAGGGGAAAGTATCCCAATAGCTAATCCTGAAGTGGCTATAGTTGGGTCTTTGGGAGATTCTGAAATGGCAGTTTCTGGAGGAGAATCTATACATGCCAATATGCGAGAACCTGTTGATGTTTTGGCTCCACCAGCTTCAGTTGATGATGCTAGGGAACAGCTTCTGGATACTGTTGGAACATGGAGCCCAAGGTTGGAAGAGGAGAGAGAGTTATTGTCTTCACAAGAAGAATTTCCTGATTTGTCCTTGATACCAAGGCAATATCAGGTAACAGATGTAGGGGCAATGCAGGAAGCTGAGAGTCTGGGTTCGAAGCAGTTGGACAGAAGCAGTGAGATAGAGATTGAAGGAGGTGTAAAGCTTGCTTTGTCTGAGCTCAGGGGAAGTGTAGAAACTCTTGCAAGGGAAGCCTCAGAAGTAACTGTTATGGAAGAAGCAACCCATGAAGAAGAGCAAAGTGGTGATGCAGATGATGTTTCTGCTTCTGCTTCTGCTGGTGCACCCGATGAGGTTGAAGATAAAGAAATTCACAGGAGAGATAAGGTTCCTGTTTCTGGTCAGGCTATCCCTGAAGTTGATGATTCTCTGACTATTAGTTCTGAAGTGACAAATCAGCAGAGAGCAGATGTAGATGTCAGCTCATCGAATGAAGAAGAAATGGAAATGCTATCCAGGTCTGGTGATACGGGAAGTAACTGGAAAGAAAGAGCTCAACCAGGTGCAAAAGGTAGAAAGGGTGATGAGGTATATCAACAGGAAGGTTTACCTGAAGGGTCTTTTGTATCAGAGGACAAAAGCCATGAAAGGCCTCTTGAAACCAAAATATTGAGTTTACCCAGAGGATGGACAGTATTTCCTGATGCAGATATAAGCTCAGTTAGCCTCTCACAGCTTGCAGAGTTGGTAAAGGCACTCAATGAGGATGAATTCAGGTTTCTGCTCAAATCAAGAGATTCTGCATCTAATGCACAAGTAGGGAATATTGATAGCTTGACTGTACCAGAATCCGGCTTGTCAGATGTTTTGGTGAGACTTAAAGAACAACTGTATCTTACAGATTTTGCAAAAGAACTGCACCTTTGTGAACAAACTGAGATGCAAATGGACTTCTGTCAACGTAATTATCAGTTAGTTAATGAAATATCCATGCTCAATGCTTCACTTAGTGAAGTTCGAGAGAGGAATAAAAGTATTTCCACAGAGCTTGAACAGCGTAGCTCTGAACTTCAGGTCATTTTGCGTGATAAGGAAGAGCTCCAAAACCAATTAAATACTACAACAAGAGAGATTAAGGAATTCTATTCTCGATTTGATGAGTTGCAGATTAAGCTGGAAAGGTCTCAGATGGAGTTGTCAAGCCTGACAATGGAGTTAGCTGATTCCAAGGATCTGGTTGCTGCTCTGGAGGTGGAAAATAAAACCTTAAATGGGAATCTGGCTTCAGTGATGGAGGGCAGGAAGAAAATTGAGGAGGAAAAGGAGTTTTTTCTCTATGAGAATGAGAAATTGTATACTGACCTGGCTAGCTGCAATGGTTTATTGGCAAATATTCAGGTGGAAAAGGCGGACTTAGAAAGGAAGGAGAGGATGAAGCTTGAGGAGCAAAAGGAGTTTTCTGTCCATGAGAATGAGAAACTCTCAGCAGAATTGGCTGACTGCAACTCTCTAATTGCAGCTTTACAAGCTGAAAATGCCAACTTGAATACAAGTCATGCACTGGTAATGGAGGAGAGAAAGAAGCTTGAGGAGGACCAGGTGTCTTTAGCCCATGAGAATGAGAGACTTTCAGCTGAGCTTCTTGTTCATCAGGAGCAATTATCTACTGAACATGGCACATGCATGCAGCTTGAGCTTGACCTAAAAGAAGCAACCATGCGCCTTGAACAACTCACTGAGGAAAATAGCTTTCTCAACAACAATCTGGATATACATAAAGCTAAGATAAGCGAGATTGATCACAGTCAAGTCCAACTAACTTCTCTAGCTGCGGATGCTGGGTATCAGTGTGAAAATTCTGGTATACCAATCAGGGCCCGTCAGCATGCATCTGATGCTGCAGGTTCTCGCCAAATTCCTGGCAAGCAAGATCATGAACAGCATAAATGTGATGTCTATGACGATTCCTTTGGGTTCATGGTCTTGAAGAGACACTTGCAGGAGGTGGAGAGAATAATCCGGGAACTTGAAGGGGCTGTTGAAGAGATGCACTCTCACTCAGTATCCTTGAGTAGTTCAGGTGCAAAATTTGCTGCTTCTGGGGTGTCAAAATTGATTCAGGCCTTTGAGTCAAAAGGTCATCTTGATGACGATGAGGTAGAAGAAATACATTCAACTGAAGATCAATCACCTGCAGATTCGTATATATTTGCAAAAGAACAAGGAGGAATTCTGAAGGCAGTGCTTAAGGAGTTGAGCCTGGATGTTGAGAATGCTTGCGAACTCTTCAAGACCAGGAAGAGTGAGCTTGAGGTTCTGTATGAAGCCTTGAAGCAACAAGACATCAGCCTTAAAACTGAGAACACTGAGCTTGGTAAAAAGCTGACTGAATATCAATCAAGAATCAATGAATTGGAGGGTCAGTTGTATGATATACAGCAGAGTTCAGATGAGATGGCTTCCACGATGTATAATCAAGTAGAAAATCTGCAGAAAGAAGTGACTGAGAATGAATTGATGCTCAGGCAAGAATGGAATTCTACCATTGCTCAGATTGTTGAGGAAGTTGGGAAGCTTGATGCAACTGCTGGGAGATTCTTCACCTCTGCCATCTCATCTGGCCCTCATGATGGCTTTGGTATTTGTGATATTGTTGCTAGTTCCATTAATGCTGCTACCAAAGTGATTGAGGATCTGCAGGAGAAACTTGAAGCTACTCTTGCAGACCATGAAGCAATCTGTAGTTCATACAAGGAAGTGAATGAGAAGTTCAATGAATTGCATGGGAAGAATGAAGTGGCTATTGATACATTGCATAAGATTTATGATGACCTTAGGAAACTTGTAAATGATTCACATGGATATGTGGAAGAAAGTGAAATCAACGTACAATATAAAAAACTACTTGATCCCATCAATCCCAGTAGCTACGAGACCCTCATAGAACAGCTAAGCATTCTTTTGGTTGAGAGATCGCAGCTTGAGTCAGTAAGCAACAGACTCAGTTCGGAGTTGATGAGCAGAATGAAAGAAATAGAGGAACTGAACAAAAAAGGAGGTGATTTGAATGCCATTCTTAAGTTGGTTGAAAATATTGAGGGTGTTGCTGATGAGCAGGTGAGCTTTTCTCGAGAAGAGTTTGGATCCAAGGTGATTGAAGTGAGTGACTTGCAGGGTAATGTAAATGAGTTAAATTTATTGAATCTTCAGCAGAAAAATGAAATCCTTGTTCTCAAGGAAAGCTTGAGAAAGGCAGAGGAGGCACTTGTTGCTGCTCGTTCTGAATTGCAGGAGAAGGTAACTGAACTTGAGCAGTCTGAGCAGCGGGTATCTTCTGTTAGAGAGAAGCTCAGTATTGCTGTTGCCAAAGGTAAAGGTCTGATTGTGCAGCGAGAGACTCTCAAGCAGTCCCTTGCAGAGATGTCCAATGAATTAGAGAGATGCTCACAGGAGTTACAGTCTAAAGATGCCAGACTACATGAGGTTGAAATGAAACTGAAGACTTATTCAGAGGCAGAGAATAGAAGAGATCTTGGAAGACCTAGAGTTGCCAGAGCATTTTCATTCCAGAGATATAATTGA 3897 42.29 MAPDIDAEAIDPPSMPLSPKMGKVEKFSTDYTELPLEGSGVGENDVDSSVSNKGESIPIANPEVAIVGSLGDSEMAVSGGESIHANMREPVDVLAPPASVDDAREQLLDTVGTWSPRLEEERELLSSQEEFPDLSLIPRQYQVTDVGAMQEAESLGSKQLDRSSEIEIEGGVKLALSELRGSVETLAREASEVTVMEEATHEEEQSGDADDVSASASAGAPDEVEDKEIHRRDKVPVSGQAIPEVDDSLTISSEVTNQQRADVDVSSSNEEEMEMLSRSGDTGSNWKERAQPGAKGRKGDEVYQQEGLPEGSFVSEDKSHERPLETKILSLPRGWTVFPDADISSVSLSQLAELVKALNEDEFRFLLKSRDSASNAQVGNIDSLTVPESGLSDVLVRLKEQLYLTDFAKELHLCEQTEMQMDFCQRNYQLVNEISMLNASLSEVRERNKSISTELEQRSSELQVILRDKEELQNQLNTTTREIKEFYSRFDELQIKLERSQMELSSLTMELADSKDLVAALEVENKTLNGNLASVMEGRKKIEEEKEFFLYENEKLYTDLASCNGLLANIQVEKADLERKERMKLEEQKEFSVHENEKLSAELADCNSLIAALQAENANLNTSHALVMEERKKLEEDQVSLAHENERLSAELLVHQEQLSTEHGTCMQLELDLKEATMRLEQLTEENSFLNNNLDIHKAKISEIDHSQVQLTSLAADAGYQCENSGIPIRARQHASDAAGSRQIPGKQDHEQHKCDVYDDSFGFMVLKRHLQEVERIIRELEGAVEEMHSHSVSLSSSGAKFAASGVSKLIQAFESKGHLDDDEVEEIHSTEDQSPADSYIFAKEQGGILKAVLKELSLDVENACELFKTRKSELEVLYEALKQQDISLKTENTELGKKLTEYQSRINELEGQLYDIQQSSDEMASTMYNQVENLQKEVTENELMLRQEWNSTIAQIVEEVGKLDATAGRFFTSAISSGPHDGFGICDIVASSINAATKVIEDLQEKLEATLADHEAICSSYKEVNEKFNELHGKNEVAIDTLHKIYDDLRKLVNDSHGYVEESEINVQYKKLLDPINPSSYETLIEQLSILLVERSQLESVSNRLSSELMSRMKEIEELNKKGGDLNAILKLVENIEGVADEQVSFSREEFGSKVIEVSDLQGNVNELNLLNLQQKNEILVLKESLRKAEEALVAARSELQEKVTELEQSEQRVSSVREKLSIAVAKGKGLIVQRETLKQSLAEMSNELERCSQELQSKDARLHEVEMKLKTYSEAENRRDLGRPRVARAFSFQRYN* 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9019649 9026026 - Vvi4g668 Vvi4g668 785447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g668 1298 Coils Coil 893 920 - -
Vvi4g668 1298 Coils Coil 994 1014 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 221 237 - -
Vvi4g668 1298 Gene3D - 841 1092 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 34 56 - -
Vvi4g668 1298 Coils Coil 1103 1123 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 731 752 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 194 208 - -
Vvi4g668 1298 Coils Coil 767 791 - -
Vvi4g668 1298 Coils Coil 666 700 - -
Vvi4g668 1298 Gene3D Nucleotidyltransferases domain 2 431 544 - -
Vvi4g668 1298 PANTHER A-TYPE INCLUSION PROTEIN, PUTATIVE-RELATED 935 1280 - -
Vvi4g668 1298 PANTHER A-TYPE INCLUSION PROTEIN, PUTATIVE-RELATED 1 941 - -
Vvi4g668 1298 PANTHER SYNAPTONEMAL COMPLEX PROTEIN ZIP1 1 941 - -
Vvi4g668 1298 PANTHER SYNAPTONEMAL COMPLEX PROTEIN ZIP1 935 1280 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 190 319 - -
Vvi4g668 1298 Coils Coil 560 651 - -
Vvi4g668 1298 Coils Coil 1236 1270 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g668 1298 Coils Coil 1173 1221 - -
Vvi4g668 1298 MobiDBLite consensus disorder prediction 245 286 - -
Vvi4g668 1298 Coils Coil 455 524 - -
Vvi4g668 1298 Coils Coil 865 885 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g668 - - - vvi:100260617 2154.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g668 . . . . . . . . . . Cma01g01576 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04409 Chy04g00291 . . . . . . . . . . . . . . . . . . Bhi09g02376 . . . . . . . . . . . . . . . . Cme04g00333
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071390 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1