Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g670 ATGTATATAAAGCAGGTTATTATCGAGGGTTTTAAGAGCTACAGAGAGCAAATTGCTACTGAACCTTTCAGTTCAAAAGTTAATTGCGTAGTTGGCGCTAATGGATCTGGCAAGACGAATTTTTTCCATGCGATTCGTTTCGTACTAAGTGATCTCTTCCAAAACCTGCGCAGTGAAGATAGACATGCACTACTTCATGAAGGTGCAGGACATCAAGTTCTATCCGCTTTTGTGGAGATTGTGTTTGATAATTCTGACAATCGCATTCCGGTTGACAAAGAGGAGGTGCGCTTACGAAGAACTATTGGTCTGAAAAAGGATGAGTATTTCTTGGATGGAAAGCATATTACGAAAACAGAAGTTATGAATTTACTGGAAAGTGCTGGTTTCTCTCGTTCCAATCCTTACTATGTTGTGCAGCAAGGGAAGATAGCATCACTAACATTGATGAAAGACTCTGAGCGACTGGATCTGCTGAAGGAAATTGGTGGCACCCGAGTTTATGAGGAGAGACGACGTGAAAGTCTGAAAATTATGCAAGAAACTGGTAACAAGAGAAAGCAGATAATTCAAGTCGTTCAATACTTGGATGAGCGATTAAAGGAACTGGATGAAGAGAAAGAGGAACTGAGAAAATATCAGCAGCTGGACAAGCAGCGGAAATCTCTAGAATACACTATTTATGACAAGGAACTCCATGATGCTAGGCATAAATTGGGGGAGGTTGAAGAGGCTCGAACCAAAGTTTCTGAAACGTCTACAAGGATGTATAACAGTGTTCTGGAAGCCCATGAAAAGTCTAAGGACTTGGATAAGACATATAAAGATCTAACAAAAGATGTTCAAGGTTTAAACAAAGAGAAAGAATCAACTGACAAGCAGCGATCTGAGGCAATACAGAAGCGCACACAGCTTGAACTTGATGATAAAGATCTAAGAGAAAAAATGTCTGTGAATATTAAGGCCAAGGAGGATGCAGCAAAACAGCTTGAGATTCTACAGAGAGAAATTCAAGACTCAACAGAGGAGCTTCACAAAATTACTCCTTTGTACGATGAGAAAGTCATAGAGGAGAAGGAGATATCTAAAGGAATAATGGAGCGTGAAAAGCAGCTTAGCATTCTTTATCAAAAACAAGGTCGAGCTACTCAATTTTCTAGCAAAGCTTCACGTGATAAATGGCTTCAAAAGGAAATTGATGATCTTGAACGAGTTCGTTCTTCGAATATGGTTCAGGAGAAAAAACTCCAGGATGAAATTCATCAACTCAATGCCGAGGTGAAAGAAAGAGATATCTACATTGATAGTCGCAAAAAGGAAATCGAATTGTTACAATCACTCATCTCTCAGTCTCGTGATGGTTTCAACGATTACAAGGCACAGAGAGACAAGCTGCAGGATGAGCGGAAGTCCTTATGGGGGAAAGAAAGTGAACTCTCTGCTGAAATTGATAAGCTAAAGACAGAAGTTGTAAAAGCCGAAAAGAGTCTTGACCATGCAACTCCTGGTGATATTAGGAGAGGACTGAATTCTGTTCGGAGGATATGCAGAGAGTTTGAAATTCATGGAGTCTTTGGTCCAATTTTTGAGTTACTTGACTGTGATGAAAAATTTTTCACTGCTGTCGAAGTTACTGCTGGAAACAGCTTATTCCATGTGGTGGTTGAAACTGATGAAGTATCAACCCAGATAATTAGGCACCTTAATGCATTGAAAGGTGGACGGGTTACTTTTATACCACTGAATAGGGTGAAGGCTCCACATGTGGCTTATCCGCAGAGCTCTGATGTGATACCTTTATTGAAGAAATTGAAATTCTCACCTAATTATACTCCAGCTTTTGCCCAGGTATTTGCTAGAACAGTGATTTGCCGGGATTTGGATGTCGCTACAAGGGTTGCTCGTACTGATGGTTTAGATTGTATAACCTTAGAAGGTGATCAAGTAAGCAAGAAAGGTGGAATGACTGGGGGATTTTACGATTATAGGCGCTCAAAACTGAAATTTATGAATATAATTAGGCAGAACTCAAAGTCCATCAACATGAAGGAAGATGAGCTGGAGAAAGTTAGGTTTAAGCTTCAAGATATCCTTTACGCTAATGAATTTCATCTAGTCACTGAGCAGCAGAAAATTGATGCCAAGCAGGCTCATGACAGATCAGAATTGGAGCAACTAAAGCAGGACATTCTTAATGCTAATAAGCAGAAAGAGTCCATTTATAAAGCTCTTCAAAAGAAGGAAAAGTTGCTTGCAGATGTTCGGACTCAAATTGAGCAGCTCAAAGCCAGTATGGCTATGAAACAGGCTGAAATGGGTACGGATCTCATTGATCACTTAACACCGGAAGAAAAAGATCTGTTATCACGATTGAATCCTGAAATAACAGACCTGAAAGATCAGCTTATCACATGCAGAACGGATCGCATAGAGATTGAAACAAGAAAAGCAGAGCTTGAGACCAATCTAACCACCAACCTTGTTAGACGGAAGCTAGAATTAGAGGCTATAATATCTTCTGCAGAGACTGACATTTGGAGTGGGGAAGCTGAGTTGAAGAGGCAAGAACTAAAGGAGGCTAAGTTGTTGGTTGAAGATTTGACGCAGCGGCTCAAAAGAGTTTCTGAAAATATAGATGAACGAACAAAGCAACTGAGGAAGATCAAAGATGAAAAAAATAAGTTAAAGAGTTTGGAAGACAACTATGAGAGGACGCTCCAGGATGAAGCAAAAGAACTAGAGCAATTATTAAGTAAAAGAAATCTTCTTCTTGCTAAACAAGAAGATTACTCAAAGAAAATCAGAGAATTGGGTCCACTATCCTCAGATGCTTTTGACACATACAAAAGGAAGAGCATCAAAGAATTGCATAAAATGCTTCACAAGTGCAATGAGCAACTCCAACAGTTCAGCCATGTAAACAAGAAAGCACTTGATCAATATATAAATTTCACAGAGCAACGGGAAGAACTCCAGAAAAGGCAAGCAGAATTGGATGCAGGTGATGAGAAAATTAGAGAACTTATATCAGTTCTGGATCAACGGAAGGATGAATCGATAGAGCGGACGTTCAAAGGCGTTGCTAGGCACTTTCGAGAAGTATTCTCTGAACTTGTACAAGGTGGCCATGGGTTTTTGGTTATGATGAAGAAAAAGGATGGTGATCATGGTGATGATGACCATGATGAGGATGGGCCTCGTGAAGCTGACATGGAAGGAAGAGTTGAAAAATACATTGGTGTGAAAGTGAAGGTTTCTTTTACTGGGCAAGGGGAGACACAGTCAATGAAGCAATTGTCAGGGGGTCAAAAAACAGTAGTAGCCCTGACACTAATCTTTGCCATACAACGATGTGATCCTGCTCCTTTTTATCTTTTTGATGAGATAGATGCTGCCCTTGATCCTCAGTATAGAACTGCTGTTGGAAATATGATTCGTCGCCTGGCAGACATGGCTAATACTCAGTTCATAACCACAACATTCCGTCCGGAGCTTGTGAAAGTTGCTGACAAGATATATGGGGTGACACATAAAAACAGAGTCAGCCATGTCAATGTTGTCTCCAAGGAAGATGCATTAGATTTTATTGAGCATGATCAGTCTCACAACACTGATTAA 3618 40.13 MYIKQVIIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARHKLGEVEEARTKVSETSTRMYNSVLEAHEKSKDLDKTYKDLTKDVQGLNKEKESTDKQRSEAIQKRTQLELDDKDLREKMSVNIKAKEDAAKQLEILQREIQDSTEELHKITPLYDEKVIEEKEISKGIMEREKQLSILYQKQGRATQFSSKASRDKWLQKEIDDLERVRSSNMVQEKKLQDEIHQLNAEVKERDIYIDSRKKEIELLQSLISQSRDGFNDYKAQRDKLQDERKSLWGKESELSAEIDKLKTEVVKAEKSLDHATPGDIRRGLNSVRRICREFEIHGVFGPIFELLDCDEKFFTAVEVTAGNSLFHVVVETDEVSTQIIRHLNALKGGRVTFIPLNRVKAPHVAYPQSSDVIPLLKKLKFSPNYTPAFAQVFARTVICRDLDVATRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIRQNSKSINMKEDELEKVRFKLQDILYANEFHLVTEQQKIDAKQAHDRSELEQLKQDILNANKQKESIYKALQKKEKLLADVRTQIEQLKASMAMKQAEMGTDLIDHLTPEEKDLLSRLNPEITDLKDQLITCRTDRIEIETRKAELETNLTTNLVRRKLELEAIISSAETDIWSGEAELKRQELKEAKLLVEDLTQRLKRVSENIDERTKQLRKIKDEKNKLKSLEDNYERTLQDEAKELEQLLSKRNLLLAKQEDYSKKIRELGPLSSDAFDTYKRKSIKELHKMLHKCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGFLVMMKKKDGDHGDDDHDEDGPREADMEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMANTQFITTTFRPELVKVADKIYGVTHKNRVSHVNVVSKEDALDFIEHDQSHNTD* 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9060433 9112245 + Vvi4g670 Vvi4g670 785449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g670 1205 Coils Coil 974 994 - -
Vvi4g670 1205 Gene3D - 986 1197 IPR027417 -
Vvi4g670 1205 Coils Coil 476 496 - -
Vvi4g670 1205 Gene3D - 593 659 - -
Vvi4g670 1205 Coils Coil 186 216 - -
Vvi4g670 1205 Pfam RecF/RecN/SMC N terminal domain 2 1181 IPR003395 -
Vvi4g670 1205 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1201 - -
Vvi4g670 1205 SUPERFAMILY Smc hinge domain 466 675 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi4g670 1205 PIRSF SMC 1 1194 IPR024704 GO:0005524|GO:0016887
Vvi4g670 1205 Coils Coil 850 926 - -
Vvi4g670 1205 SMART SMC_hinge_2 522 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi4g670 1205 Coils Coil 716 771 - -
Vvi4g670 1205 Coils Coil 313 343 - -
Vvi4g670 1205 CDD ABC_SMC3_euk 3 166 IPR041741 GO:0005524|GO:0016887
Vvi4g670 1205 Pfam SMC proteins Flexible Hinge Domain 522 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi4g670 1205 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 3 1201 - -
Vvi4g670 1205 Gene3D - 1 178 IPR027417 -
Vvi4g670 1205 Gene3D - 456 592 - -
Vvi4g670 1205 Coils Coil 267 301 - -
Vvi4g670 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1181 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g670 K06669 SMC3, CSPG6; structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) - vvi:100257283 2269.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009801 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32