Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g671 ATGAAAGCATTGAGTGGTTGTTTCAAAAGGATAAAAATTTCTGCATATTTGGGACACTTAGAAGCCCACCACGAGCCAAGAGGCTTCGTAGCAGTGACCGTGCTTCTTACTGAGACGCACCTTACCCAAAGGATCGTCAAGTTCACCGTGATGATTATGTTCTTTTGTCTGTTCCATTTCTCACTTGTTCTTAGATGCAATTTTCCTTCTTTCTTTCTTCTTGGGCCTTTCTTATTACTAGGAATCACTTATGTTCGGGTGCTTGTAGTGCTAAAAGATAAAACTTATGCTTTTATCATGTATTCACATTGTGTATGCTTGCCTCAGATTGGTGACATGAAGAGACTAATTTCTCTACAACTATTGAAAAATTGCAGTTTGCTACTGTCTTTTGGTTTAAATTATCACAATTCACAATCAATTATATTGTTAATTTCTAGGCAAGATTATCTATGCAATAAATGTAAGAGACTAGGGCATTTTTCTAGAGATTGCCCAAATGTGACTGTATGCAACAACTGTGGCCTTCCTGGCCACATAGTTACTGAGTGTAACTCAACAACCATTTGTTGGAACTGTAAAGAGTCTGGACATCTTGCAAGCCAATGTCCTAATGATCCAGTGTGCCATATGTGTGGCAAAATGGGTCACCTGGCTTGGGATTGCTCGTGCCTAGGTCTACCTGCTCATGATGCGAGACTCTGCAACAACTGCTACAAGCCAGACCAGGTCTACCTGCTCATGTTTAACCGTGTTGTGCACAGCAATCCTACTTTTGATGATTCTTATGGAAAATTTTACCTTGTGGAGCAGATTCTGGGCGAGGTAGATGCTCTAGAATGGGTATATCATGAGAGGGAGGTATACCCAATTTGGCTCTGCCCACATCGATTGTACAAGCTTCCTGTCGAAACAATGATATATCCTGAACCAGGCTTTGAGCTGCCTCGCAAACAGGGTGACACGCATTATGCCCAGATGTACACAGATGTGGAGATGTACTATGCGCCAGGGCCTGTCTTGAGGGGATATCATATACAAACTAATGTGACTGTGACGAACAATACCCTAGAGATCCGCTTGTATTGGGCTGGGAAAGGGACAACATGTATCCCTAAGAGAGGAAGATATGGTCCTCTAATATCTGCTATTTCTATATGTCCCAGTAAGTTAAATATTCATGAGCCTCTCATTTCAAAATTAGTACAATTGCTGCAGCTGATAATTAACCAGCAATTAATTGCAACTCTTAGACTTGATTTGGTTTCTTTTTGTTTGAGTCATTCTTCATCTAGTTCTATTTTTGTCTTCTTGTATCTCTCTTCCTTGATCTCTCCTTTGTTGATAGTTTAA 1353 40.5 MKALSGCFKRIKISAYLGHLEAHHEPRGFVAVTVLLTETHLTQRIVKFTVMIMFFCLFHFSLVLRCNFPSFFLLGPFLLLGITYVRVLVVLKDKTYAFIMYSHCVCLPQIGDMKRLISLQLLKNCSLLLSFGLNYHNSQSIILLISRQDYLCNKCKRLGHFSRDCPNVTVCNNCGLPGHIVTECNSTTICWNCKESGHLASQCPNDPVCHMCGKMGHLAWDCSCLGLPAHDARLCNNCYKPDQVYLLMFNRVVHSNPTFDDSYGKFYLVEQILGEVDALEWVYHEREVYPIWLCPHRLYKLPVETMIYPEPGFELPRKQGDTHYAQMYTDVEMYYAPGPVLRGYHIQTNVTVTNNTLEIRLYWAGKGTTCIPKRGRYGPLISAISICPSKLNIHEPLISKLVQLLQLIINQQLIATLRLDLVSFCLSHSSSSSIFVFLYLSSLISPLLIV* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9132359 9153875 + Vvi4g671 Vvi4g671 785450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g671 450 ProSiteProfiles Zinc finger CCHC-type profile. 171 184 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 SMART c2hcfinal6 170 186 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 SMART c2hcfinal6 189 205 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 SMART c2hcfinal6 208 224 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 Gene3D - 145 187 - -
Vvi4g671 450 Gene3D - 188 226 - -
Vvi4g671 450 Pfam Malectin domain 346 384 IPR021720 -
Vvi4g671 450 ProSiteProfiles Zinc finger CCHC-type profile. 209 222 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 SUPERFAMILY Retrovirus zinc finger-like domains 187 223 IPR036875 GO:0003676|GO:0008270
Vvi4g671 450 ProSiteProfiles Zinc finger CCHC-type profile. 152 167 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 ProSiteProfiles Zinc finger CCHC-type profile. 190 205 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 PANTHER - 139 251 - -
Vvi4g671 450 Pfam Zinc knuckle 152 167 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 Pfam Zinc knuckle 190 205 IPR001878 GO:0003676|GO:0008270
Vvi4g671 450 SUPERFAMILY Retrovirus zinc finger-like domains 148 187 IPR036875 GO:0003676|GO:0008270
Vvi4g671 450 PANTHER ZINC FINGER PROTEIN GIS2-LIKE 139 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g671 K09250 CNBP; cellular nucleic acid-binding protein - vvi:100251241 209.149
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3