Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g672 ATGGCGGTTGAGCTTCTAGGGTTTTCCAAAATGGATGAGCAGATCGCGATTCAAGATGCGGCTTCGGCTGGATTGAAGAGCATGGAGCATCTGATCCGCATGCTGTCTCATCAGACCAATCAAAACCACAACATGAATCAGCTCGATTGCAGGGAAATCACAGATTACACCGTTTCCAAGTTCAAGAAGGTCATTTCCATCTTGAACCGTACCGGCCACGCCCGCTTCCGCCGCGGACCGGTTTCTTCTTCTGATTCTCCCTCTAGCGATCCTATGTCGTCCGCGACAAATTCGTCATTTATGTCGTCGATCACCGGAGACGGCAGTGTTTCTAACGGAAAGCAGGGGTCATCTCTGTTTCTAGCTCCAGCGCCGGCCGTTTCTGCCGGTAAACCTCCTCTCTCATCTTCTTGCCGGAAGAGATGCCACGAGCATGATCATTCCGATGATATATCCGGAAAGTACTCCAGCTCCGGCCGTTGCCATTGCTCTAAAAGAAGGAGATCTCGGGTGAAGAAAACTATTAGAGTGCCAGCAATCAGTTCGAAAATCGCCGATATTCCTGCGGACGAGTACTCGTGGAGAAAGTACGGCCAGAAGCCAATCAAGGGCTCACCATACCCACGTGGTTATTACAAGTGCAGTAGCATGAGAGGGTGTCCCGCTAGGAAACACGTGGAGCGGGCCTCAGATGATCCAGCGATGCTGATCGTGACGTACGAGGGGGAGCACTCTCACTCACAGGTCGCGATGCAGGAGATGATACCCCACGGAGGAGTGGGCTTGGTGTTCGAGTCAACTTGA 804 52.24 MAVELLGFSKMDEQIAIQDAASAGLKSMEHLIRMLSHQTNQNHNMNQLDCREITDYTVSKFKKVISILNRTGHARFRRGPVSSSDSPSSDPMSSATNSSFMSSITGDGSVSNGKQGSSLFLAPAPAVSAGKPPLSSSCRKRCHEHDHSDDISGKYSSSGRCHCSKRRRSRVKKTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERASDDPAMLIVTYEGEHSHSQVAMQEMIPHGGVGLVFEST* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9363168 9365026 - Vvi4g672 Vvi4g672 785451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g672 267 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 84 IPR044810 GO:0003700
Vvi4g672 267 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 88 250 IPR044810 GO:0003700
Vvi4g672 267 MobiDBLite consensus disorder prediction 132 160 - -
Vvi4g672 267 MobiDBLite consensus disorder prediction 81 117 - -
Vvi4g672 267 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 84 - -
Vvi4g672 267 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 88 250 - -
Vvi4g672 267 Pfam WRKY DNA -binding domain 190 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g672 267 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g672 267 Gene3D WRKY domain 174 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g672 267 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g672 267 MobiDBLite consensus disorder prediction 137 153 - -
Vvi4g672 267 MobiDBLite consensus disorder prediction 76 117 - -
Vvi4g672 267 Pfam Plant zinc cluster domain 139 186 IPR018872 -
Vvi4g672 267 SUPERFAMILY WRKY DNA-binding domain 186 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14770 PF03106 WRKY 1.20E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g672 - - vvi:100251308 384.415