Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g673 ATGAGCTCGCTCCAACTCCTTCAAGCCTCCCCACCCTCTCTAAGCTCTGCCAAGGCTCACAAATTGCCATTATATGGCCTTGATTCATGTTCAACCATGGCCGAGCTCAAGCAGTATCATTCCCAAATCATCCGACTTGGCCTTTCAGCAGATAATGATGCAATGGGCAGAGTGATAAAGTTCTGTGCTATCTCCAAATCAGGTTACTTGCGGTGGCAGCTTGCCAGAAACTGCATTTTCATGTACTCCCGAATGTTACATAAATCTGTCTCACCCAACAAATTCACCTACCCTCCTCTGATAAGAGCTTGTTGCATTGATTACGCTATTGAAGAAGGGAAGCAAATACATGCACATGTTTTAAAATTCGGGTTTGGTGCTGATGGGTTTTCTTTGAATAATTTGATCCATATGTATGTGAATTTTCAATCTTTGGAGCAAGCAAGGAGGGTTTTTGATAATATGCCTCAGCGGGATAGAAATTCTGTTTCTTGGAATGCCATGATTGCTGCTTATGTCCAGAGTAACCGTTTGCATGAGGCATTTGCTCTTTTTGATAGAATGAGATTGGAAAATGTGGTATTGGATAAATTTGTAGCAGCAAGTATGTTATCAGCCTGTACTGGATTAGGAGCCTTGGAGCAAGGGAAGTGGATACATGGATATATTGAGAAGAGTGGGATTGAATTGGACTCAAAACTTGCTACAACAGTTATTGACATGTACTGCAAATGTGGTTGCTTGGAAAAGGCCTCCGAAGTCTTTAATGAGTTGCCCCAAAAAGGAATTTCTTCTTGGAATTGTATGATTGGTGGGCTGGCAATGCATGGAAAAGGCGAGGCTGCCATTGAGCTTTTTAAGGAGATGGAGAGGGAGATGGTAGCCCCTGATGGCATCACTTTTGTGAATGTCCTCAGTGCATGCGCTCATTCAGGATTAGTTGAAGAGGGGAAACATTACTTTCAATATATGACTGAAGTTCTTGGTCTTAAGCCTGGTATGGAGCATTTTGGATGCATGGTTGACTTGCTTGGAAGAGCTGGACTGCTGGAGGAGGCAAGAAAGCTCATAAATGAGATGCCTGTGAATCCTGATGCAGGTGTATTAGGTGCTCTTGTTGGTGCTTGTAGAATCCATGGAAACACTGAATTGGGTGAGCAAATAGGAAAGAAAGTAATTGAACTAGAGCCTCATAACAGTGGCCGCTATGTTTTATTAGCTAATTTGTATGCCAGTGCTGGTCGATGGGAAGATGTTGCTAAGGTGAGAAAATTGATGAATGACAGAGGAGTGAAGAAGGCTCCTGGTTTTTCCATGATTGAATCAGAAAGTGGTGTAGATGAATTCATTGCTGGAGGAAGGGCTCACCCACAAGCTAAAGAGATATATGCCAAACTTGACGAGATATTAGAAACTATAAGATCTATTGGTTATGTGCCTGACACTGATGGGGTATTGCATGATATTGACGAGGAGGAAAAGGAGAACCCCTTATACTACCACAGCGAGAAACTTGCAATTGCCTTTGGGTTGTTGAAGACTAAGCCTGGGGAAACTCTTCGCATCTCTAAGAATTTGCGGATATGTAGAGATTGTCACCAAGCAAGTAAGCTTATCTCAAAAGTTTATGATCGTGAAATAATTATAAGGGACAGGAACAGATTCCACCATTTTAGAATGGGAGGGTGTTCTTGTAAGGATTACTGGTGA 1710 42.28 MSSLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9378967 9386209 - Vvi4g673 Vvi4g673 785452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g673 569 Pfam PPR repeat 337 361 IPR002885 -
Vvi4g673 569 Pfam PPR repeat 131 158 IPR002885 -
Vvi4g673 569 Pfam E motif 379 441 IPR046848 -
Vvi4g673 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vvi4g673 569 Pfam E+ motif 448 470 IPR046849 -
Vvi4g673 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi4g673 569 Pfam PPR repeat family 262 309 IPR002885 -
Vvi4g673 569 Pfam PPR repeat family 161 207 IPR002885 -
Vvi4g673 569 SUPERFAMILY TPR-like 138 418 IPR011990 GO:0005515
Vvi4g673 569 Pfam DYW family of nucleic acid deaminases 477 569 IPR032867 GO:0008270
Vvi4g673 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 261 IPR002885 -
Vvi4g673 569 PANTHER - 158 555 - -
Vvi4g673 569 PANTHER - 2 157 - -
Vvi4g673 569 Gene3D Tetratricopeptide repeat domain 24 238 IPR011990 GO:0005515
Vvi4g673 569 Gene3D Tetratricopeptide repeat domain 239 446 IPR011990 GO:0005515
Vvi4g673 569 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Vvi4g673 569 TIGRFAM PPR: pentatricopeptide repeat domain 265 296 IPR002885 -
Vvi4g673 569 TIGRFAM PPR: pentatricopeptide repeat domain 236 264 IPR002885 -
Vvi4g673 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 157 - -
Vvi4g673 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 158 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g673 - - - vvi:100254802 1094.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187