Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g675 ATGCCTAAGGAAGGAACTCCGTTTCCATTCCCTCAACCTTACAGTGAGGCTAATATAGTCCTAGGTGAATGGTGGAATTCAGATATTGAAACAATGGTTAATCAAGCTAATAAGTTGGGCTTGCCTCCCCCTACCTCAGATGCTCATACTATCAATGGAAAACCAGGGCCACTCTTCCCATGCTCTGAGAAGCATACATTTGCCATGGAGGTCGAGTCAGGTAACACTTATCTCCTAAGGATTGTCAATGCTGCACTCAATGACGAGCTCTTCTTCGCCATTGCTGGCCATAACATGACAGTTGTGGAGATTGATGCAGTCTACACCAAGCCCTTCACAACCCAAGCTCTCCTAATTGCACCAGGCCAGACCACAAACGTCCTAATTAAAGCCGATCGATCTCCAAGTAGATACTTCATGGCAGCCAGGCCTTTCATGGATGCACCAATCCCTGTGGACAACAAGACTGTCACTGCAATTTTACAATACAAAGGCATCCCAAACACCATTCTCCCAACACTACCCCAATTGCCTGCTCCTAATGACACTAACTTTGCTTTGAGCTATAATGGTAAGCTTAAGAGTTTGAACACTCTACAATTTCCTGCAAACGTCCCTCTTCAAGTTGATCGCCATCTTTTTTACACTATCAGTTTAGGACAAAACCCATGCCCTTCCTGCCAAAATGGAACACAGCTCACAGCTTCACTGAACAATATAACCTTTGTGGTGCCAAAAGTTGGGCTTTTGCAAGCTCATTATTCCAATATGAATGGAGTTTTTAGAACTGACTTCCCAGATCGCCCTTTTGCCCCATTCAATTACACAGGCGCACCACTTACTGCTGACCTCGGCACTTCCCTAGGAACAAGGCTCAGCAAGTTGGCTTTCAATTCAACCATTGAATTGGTATTACAAGACACTAATCTCCTCACGCACCCATGTCATCACACACCAAAATATACGGTTCCAAGATGTGTAAACCATCATAAGCTAAAATTGCAATACACACAAAAATTTATACTGGAATCAAGTCAATTGACAAAAACTGCACTAAGAAGAGCGAGAAGCAGAGAGTTTAAGGCATTCACTTTGACATCTCCGAAGGCAAATATCATTCCAGTTGGGTACTTGATGCTGGTTAACACAGACAGTCCGGGCACAAGCATCAGAGCAAGCATCTAG 1185 43.97 MPKEGTPFPFPQPYSEANIVLGEWWNSDIETMVNQANKLGLPPPTSDAHTINGKPGPLFPCSEKHTFAMEVESGNTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQALLIAPGQTTNVLIKADRSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTILPTLPQLPAPNDTNFALSYNGKLKSLNTLQFPANVPLQVDRHLFYTISLGQNPCPSCQNGTQLTASLNNITFVVPKVGLLQAHYSNMNGVFRTDFPDRPFAPFNYTGAPLTADLGTSLGTRLSKLAFNSTIELVLQDTNLLTHPCHHTPKYTVPRCVNHHKLKLQYTQKFILESSQLTKTALRRARSREFKAFTLTSPKANIIPVGYLMLVNTDSPGTSIRASI* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9388595 9395789 + Vvi4g675 Vvi4g675 785454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g675 394 CDD CuRO_2_LCC_plant 19 163 IPR034285 -
Vvi4g675 394 PANTHER MULTI-COPPER OXIDASE 1 316 IPR045087 -
Vvi4g675 394 SUPERFAMILY Cupredoxins 206 316 IPR008972 -
Vvi4g675 394 SUPERFAMILY Cupredoxins 10 190 IPR008972 -
Vvi4g675 394 Pfam Multicopper oxidase 19 165 IPR001117 -
Vvi4g675 394 Gene3D - 221 318 IPR008972 -
Vvi4g675 394 Gene3D - 15 198 IPR008972 -
Vvi4g675 394 PANTHER LACCASE-11 1 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g675 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100260259 598.586
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484