Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g677 ATGCTCGAAGATGGCTCTGAGGAAGATTCATGCTCGCAGACTACGGCGGCAGCATCGGCCGTAACAGTTACAGGTACTGGCCATATTGATCAGCTGATCCACACTGCAACTCCTACACATGATGGGGTGAGGAGATCAAAGGAGAGTGATGATGGGGCTCGAGTTGTTGCTTTTAGGACGAAATCAGAGCTGGACGTCATGGATGATGGATTTAAATGGAGGAAGTATGGGAAAAAGATGGTGAAGAGCAGCCCAAATCCAAGGAACTACTATAGATGTTCAAGTGGAGACTGCCAAGTGAAGAAGAGGATAGAAAGGGACATAGAAGATTCAAGCTATGTGATAACTACATATACAGGAATCCATAACCATCCAATCCCTGGTGTGGGGTACTACAACCAGATGCCTCTCATGGTTCCTTATGACTATGACTGGACTTTACAAGCTTCCTCCCAATCTCCTTTTTCTTGA 471 45.86 MLEDGSEEDSCSQTTAAASAVTVTGTGHIDQLIHTATPTHDGVRRSKESDDGARVVAFRTKSELDVMDDGFKWRKYGKKMVKSSPNPRNYYRCSSGDCQVKKRIERDIEDSSYVITTYTGIHNHPIPGVGYYNQMPLMVPYDYDWTLQASSQSPFS* 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9399943 9400803 - Vvi4g677 Vvi4g677 785456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g677 156 Gene3D WRKY domain 51 128 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g677 156 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 9 128 - -
Vvi4g677 156 MobiDBLite consensus disorder prediction 33 52 - -
Vvi4g677 156 Pfam WRKY DNA -binding domain 68 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g677 156 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 128 IPR044810 GO:0003700
Vvi4g677 156 SMART WRKY_cls 67 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g677 156 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g677 156 SUPERFAMILY WRKY DNA-binding domain 59 127 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g677 - - - vvi:100244369 320.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g677 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01334 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011631 1 1 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 0 1 1 1 1 3 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14771 PF03106 WRKY 1.50E-22 CL0274 Vvi TF