Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g678 ATGGGGATTAGGGTTTTTGCATTGAGGACAAGATCGGAGGAGGATATCATGGATGATGGGTTTAAGTGGAGAAAATATGGAAAAAAGAAGATCAAGAGCAACCCGATTTATCCAAGGAACTACTATAGATGTTCAAGCAGAGGATGCCAAGTGAAGAAGAGGGTAGAAAGGGATAGGGATGACTCAAGTTATGTAATAACTACATATGAGGGAGTCCACAACCACCCCACCCCTCGCAACCACATCACACTTCCTATTAATTATTGGGCTTTGCAACAAACTTCTTCTCACCCTCCTTTTTATTAA 306 41.5 MGIRVFALRTRSEEDIMDDGFKWRKYGKKKIKSNPIYPRNYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHPTPRNHITLPINYWALQQTSSHPPFY* 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9409804 9411286 - Vvi4g678 Vvi4g678 785457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g678 101 ProSiteProfiles WRKY domain profile. 12 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g678 101 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 6 78 - -
Vvi4g678 101 Gene3D WRKY domain 3 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g678 101 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 78 IPR044810 GO:0003700
Vvi4g678 101 Pfam WRKY DNA -binding domain 18 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g678 101 SUPERFAMILY WRKY DNA-binding domain 9 78 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g678 101 SMART WRKY_cls 17 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g678 - - - vvi:100852944 220.705
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0938 Cone20ag0281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011631 1 1 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 0 1 1 1 1 3 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14772 PF03106 WRKY 5.90E-24 CL0274 Vvi TF