Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g68 ATGTGCGGGGCAACTGCTCCAAATCAGTGCTCCGAGAGAAGCTGTTCGGGTGTAACTCACCCTTGCTTAAATGAAGTAGGATTGGGCTCAGAACAAGGTTCTTGCAACAGTAAGGAGCTTTCCCTGAGTTTTGGTTCTTATAGACCTGCCCAATTCTCTCAAGTAATATCTGGATCAAGATATCTTCATGTGATTCAGGAAATACTTGCTGAAATTTTGAACTATTCGCTTGAAAATCTAGACCACTCGATTTATTCAACCACTAGGACTGGGGGTCAGGCAAATGTGCAATTATCTTCAGGTTATGCTGCTCAGAGAGGGCTTTCAGTGATGGGTTCTGATGAATTTCCTGATGAGGATGGTAGATATGCAGTTCCAATGGATCCGGTGTTGCAAAAACGGGAAGTTGAAGCTAAGAAAACCCAACTTCTGGCTCTACTTCAAGTGGTTGATGACCAATATAACCAATGCTTGGACGAGATTCATACGGTGATATCTGCATTCCATGCTGCAACAGAGTTGGATCCTCAGATACATGCTCGATTTGCCCTTCATACGATCTCTTTGCTATATAAAAACCTCAGAGAAAGAATTAGCAACCAAATCCTTGCGATGGGAACACGTTTCACAAATGGATGCACAAGTGAAAAGGAGAGACCACCTTTTGAGTCTTCTTTCATCCAAAAGCAATGGGACCTCCAGCAGCTAAGAAGAAAAGATCATCAACTATGGAGACCGCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTTTACGGGCATGGATGTTCCAGAACTTTCTACATCCGTATCCTAAGGATGCGGAGAAGCATTTGCTTGCAGTAAAAAGTGGATTGACAAGGAGCCAGGTTTCCAATTGGTTTATAAATGCTCGGGTCCGACTGTGGAAGCCAATGATAGAGGAAATGTACTCAGAGATGAACAGGAGAAAGGGTCGTAGAAATGATGAAGAGTCCAACAACAGCAATCGAAGAAGCACCATAAGCATGGACAATCAAAGATATAAAATCATCTGA 1035 43.0 MCGATAPNQCSERSCSGVTHPCLNEVGLGSEQGSCNSKELSLSFGSYRPAQFSQVISGSRYLHVIQEILAEILNYSLENLDHSIYSTTRTGGQANVQLSSGYAAQRGLSVMGSDEFPDEDGRYAVPMDPVLQKREVEAKKTQLLALLQVVDDQYNQCLDEIHTVISAFHAATELDPQIHARFALHTISLLYKNLRERISNQILAMGTRFTNGCTSEKERPPFESSFIQKQWDLQQLRRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYSEMNRRKGRRNDEESNNSNRRSTISMDNQRYKII* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 746922 749384 - Vvi4g68 Vvi4g68 784847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g68 344 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 340 - -
Vvi4g68 344 SMART prehox3 50 200 IPR006563 -
Vvi4g68 344 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677|GO:0006355
Vvi4g68 344 SUPERFAMILY Homeodomain-like 246 313 IPR009057 -
Vvi4g68 344 PANTHER HOMEOBOX PROTEIN ATH1 4 340 - -
Vvi4g68 344 CDD homeodomain 244 305 IPR001356 GO:0003677
Vvi4g68 344 MobiDBLite consensus disorder prediction 313 327 - -
Vvi4g68 344 Pfam Associated with HOX 55 199 IPR006563 -
Vvi4g68 344 Gene3D - 247 328 - -
Vvi4g68 344 MobiDBLite consensus disorder prediction 313 338 - -
Vvi4g68 344 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677
Vvi4g68 344 SMART HOX_1 244 308 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14773 PF07526 POX 3.90E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g68 - - vvi:100249241 681.789