Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g682 ATGGTGTGGGGTCTGTTTCCCGTTGACCCACTTTCAGGTGAAGATAGTTACTATATCTTTGCTAAAGGCACATACAAAGTGGGTCGTAAAGGTTGTGATGTAATTGTTAAGAAAGACAAGGGAGTATCCCGGATCCATGCAGAGATAATTGTTGATTCAATGATTTCCCTAGATCCACAGTGGAATAAATCTTCTAACGTATCCTCCAATGTTCGGATAAGAGATTGCTCAAAGTATGGGACATTTATTAACAAGGATCTTGGCTCAAAGGAAAAACTTCATGAGTTCCCAAATAAGGAAACAACTCTAAAAGATGGGGACTTGGTTTCATTTGGCACTGGTAATGCAACCTACAGGTTTGGTTTTGTCCCGCTCATATTTTTTGTTTATCGCTCAGAGCCTTTCCAAATGAATCATTCTCTTCAAGATAAAATTTCATCAATAGGCGCTTCTGTTACTCGTGCATGGAGTTCAGAGTGCACACATGTGCTTGTTGATCAGTTCATGCTGGTGAAAGAAGATTTAGTTGATATTTTCTTGGCCAAGAAGCCTCTTGTCCTTAATGATTGGATTGAGTTTGTTGCAGAAAAGAATATTCGAAATGAAATTCCAAGCTGCAATGACTATGTTCCGACCTTGACATGCGGAGGCGTATCTGTCAAAGTTGGCGACTCTATATCTAGAGAAAACTGCTTGAAAGGATGCACTTTTTTGTTGGAACCTGCACACAAGTACAACTTTGGGGATAGGTTGCAGTCACTATTGGAAGCAAGTGGTGCCAAGGTTGATTCGATTGATGGATTGTCTTCAAGAAGCCAAGGCTTGGAGGGAGGAGAAAATAATCGGGTGGTGCATGTAATCCCTGCATGTTCAGCAGACAAGTTTGATTCCTTCCATAACCGCAGATCTGTATCAAGTGTGAAAGAGATGAATTTGATTAGTGCTGTTATATCTGGACATCTGGATCCTTCTACTATAATATCGCCACCTGTACTTGTCTCATCTTCATGCTCCACAGATGAGACTGTAGTAGCTGATTCTGATGCAGAAGTCGAAACAGCCACATCAAGTCATGCCAATTCTGCTGCCCACACTAAAGAAGTCTTTAAGTATGATAGCAAAGGGGAGATATCTGTAGTAGCTGATTCTGATGCAGAGGTTGAAACAGCCACATTAATTCATGCCAATGCTGCTGCCTGCACTACAGAAACCATTAAATATGATAGCAAAGGGGAGATATCTGTAGTGGCTGATTCTGATGCAGAGGTTGAAACAGCCACATCAATTCATACCAATGCTGCTGTGCGCACTGCAGAAGACATCAAATATGATAGCAAAGGGGAGATATCTATTGGTCAGGCTGCTAATGCATCAGAGACTGGCCACATGACACATTTTAGACAAAGGAATGATGGTGTAACAACAAGACGAGACAAAGTTGATGAATCTGAAAGTGGAAATCCAGATGTTTTATACAGTCAAGATTTAATTGTGAGAGATATTAACTTGCTGACATCATTTTCTTCAACAAAAAATAGAATTGTAAATTTCAAATGCTTCAGAAAGGCAAAGACTCAATCTGGGAATAGCTTCAACAATCTTATTCCATTTGCAAAGTACCCATACAAAGAATCTGACAATGGGAGTGATGAAGTAATGCAATCTGTGAAAGAAGAAAAAAAGCGGAAGCAAATGGAAGCAATTGCAGAAGATTTATTCAACAATGAGAAGGGGAGACGACGAGGAGTAGCTGGTTCTCTTGCTGGCCTTCTTACTCGTGGTCGATGA 1788 40.49 MVWGLFPVDPLSGEDSYYIFAKGTYKVGRKGCDVIVKKDKGVSRIHAEIIVDSMISLDPQWNKSSNVSSNVRIRDCSKYGTFINKDLGSKEKLHEFPNKETTLKDGDLVSFGTGNATYRFGFVPLIFFVYRSEPFQMNHSLQDKISSIGASVTRAWSSECTHVLVDQFMLVKEDLVDIFLAKKPLVLNDWIEFVAEKNIRNEIPSCNDYVPTLTCGGVSVKVGDSISRENCLKGCTFLLEPAHKYNFGDRLQSLLEASGAKVDSIDGLSSRSQGLEGGENNRVVHVIPACSADKFDSFHNRRSVSSVKEMNLISAVISGHLDPSTIISPPVLVSSSCSTDETVVADSDAEVETATSSHANSAAHTKEVFKYDSKGEISVVADSDAEVETATLIHANAAACTTETIKYDSKGEISVVADSDAEVETATSIHTNAAVRTAEDIKYDSKGEISIGQAANASETGHMTHFRQRNDGVTTRRDKVDESESGNPDVLYSQDLIVRDINLLTSFSSTKNRIVNFKCFRKAKTQSGNSFNNLIPFAKYPYKESDNGSDEVMQSVKEEKKRKQMEAIAEDLFNNEKGRRRGVAGSLAGLLTRGR* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9493850 9572196 - Vvi4g682 Vvi4g682 785461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g682 595 SMART FHA_2 24 88 IPR000253 GO:0005515
Vvi4g682 595 Pfam FHA domain 25 112 IPR000253 GO:0005515
Vvi4g682 595 CDD BRCT 125 192 - -
Vvi4g682 595 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 84 IPR000253 GO:0005515
Vvi4g682 595 PANTHER NIBRIN-RELATED 2 363 IPR040227 GO:0006302|GO:0007095|GO:0030870
Vvi4g682 595 PANTHER NIBRIN-RELATED 351 509 IPR040227 GO:0006302|GO:0007095|GO:0030870
Vvi4g682 595 PANTHER NIBRIN-RELATED 460 577 IPR040227 GO:0006302|GO:0007095|GO:0030870
Vvi4g682 595 MobiDBLite consensus disorder prediction 456 487 - -
Vvi4g682 595 Gene3D - 4 122 - -
Vvi4g682 595 SUPERFAMILY SMAD/FHA domain 17 126 IPR008984 GO:0005515
Vvi4g682 595 MobiDBLite consensus disorder prediction 464 485 - -
Vvi4g682 595 CDD FHA 2 121 IPR000253 GO:0005515
Vvi4g682 595 SUPERFAMILY BRCT domain 122 199 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g682 K10867 NBN, NBS1; nibrin - vvi:100853048 1175.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01823 Bpe14g00053 . . Bma02g00573 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009214 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34