Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g683 ATGGCGAAGTCCAAGAAAAAAGATGTCGACTTGCCGCCACCGGACCACCTCCGCTGCAACCGCAACGACGGCAAAGGGTGGCGCTGCCGGGATTACAAACTTGAGGGCCATAACCTCTGTCAATACCACCACGACAGCGCAATTTCTCGGTCCCAAAAATCCAAGCCTGACCGCAAACCCAAAACCAAACCCCAACCCAAACCCAAACCCAAAACCGAAGCCGAACCCAAACCCCAAATGGAACCGGAATCCAAACCCGACGCCAAGCTTAAAATTTCCAGAAGCAAGAGAGCCCCAGGACGGAGTGGTGCGAAAAGCAGTGACGCCACTCTCCGCAGCGACGCCGCTCGAGGCAGCGAGGTCGGTCAAGGCAGAGAGGTCGCCCGAGGTGGCGACGGCGGTCGCCGCTACCCCAGTCGCGGCAAATTGCTGAGAAGGCTTCTAGATTCGGATACAGATCAGGAATGGAGAGGAAACGGCTCCAATGCGAAGAAGAGAAATGCACAGGAAGATGAGTGTCGGTGTTGTCACCAGTGCCAGAAGAGTGACAGGGAGGTGGTGCGGTGCCGGAAGTGTCAAAGAAAGCGGTTTTGTCACCCTTGCATCGAAAGATGGTACCCCCGTGTATCGAAGGAAGCAATTGCAGAGGCTTGCCCATTTTGCAGTGGGAATTGCAATTGCAAAGCTTGTTTGGATAGGGACACTAAGACTTTGGAACCAGAGATGAGTAAGGATGATAAGATAAAACACTCCAAGTATCTGGTGAAAGTGCTTCTTCCATTTCTGGAACAATTTGATCATGAACAAGAGATGGAAAGAGAAATTGAGGCTAAGATTCAAGGGCTATCTCCACCAGAGATACAGGTGCAACAGGCAGTTCTTCGTGAAGATGAGCGTGTATACTGCAACAACTGCAGAACCTCTATAGTTGATTTCCATAGGAACTGCCCAAATTGTTCATATGATCTCTGCCTCACTTGTTGCCGGGAAATTCAGTCAAATTTTTGTGTTAGTTCCAGCAGTAAAGATCCTGGAAGTACAATATGTGAATGGAAAGTGAAAGAAAATGGTGACATCCCTTGCGCACCAAAGGAAATGGGTGGCTGTGGACATGGCCGTTTAGACCTTAAGTGTATGTTTTCTGAAACTTGGGTTTCAGAACTAAAGGAGAAAGCAGAAGGGTTAGTCAAAACCCACAAACTCACTGATGTGCTGGGAATTCCTGCATGTAGCTGCTCTTGTTTTAAATTGAATAGCGAGATTGATTTTGATAACAAGAAGTTGCGGAAAGCTGCTGCTAGAGAAGATTCCTTTGATAACTATCTGTACTGTCCATCAGAAAGTGACATCCTTCAAGGGGATCTGGTTCACTTCCAGAGTCATTGGATGAAGGGGGAGCCAGTTATTGTGAGTGATGTTCTTGAATTCACATCTGGTTTGAGCTGGGAGCCCATGGTTATGTGGCGTGCATTTCGTAAAGTAAGTTACACCAAATCCTCGCAGTTGGCAGAGAAGGCAATTGATTGCCTTGATTGGTGTGAGGTTGAGATAAATATTCACCAATTTTTCAAAGGTTACTCTGAGGGCCGTGCACATAGGAACTTGTGGCCTGAGATGCTCAAACTCAAAGATTGGCCCCCATCTAATTTGTTTCAGGAGCGGCTACCACGCCATGGTGCAGAGTTTATAAGTTCTTTGCCCTATTTGGAATACACACATCCTCGCTCAGGCCTTCTTAATCTTGCTGCAAAGTTGCCACAAAAGTCTCTGAAGCCTGACTTGGGGCCTAAAACATATATAGCATATGGCGTTGTTGAAGAGCTTGGCCGTGGAGATTCTGTAACCAAGCTTCATTGTGACATGTCTGATGCGGTAAATGTTTTGATGCATACTGCGGAAGTAACCCTTTCATCTCAGCAGCTTGCTGTGATAGAGAAATTGAAAAAGTGTCATGCTGCCCAAGACCAAAAAGAGCTTTTTGCTGCTATTCACACAGAACAAGGTGAGTTTTCTGATGATCATATGGCTTCTGGAAATAAGTTGGTTGGATTTGACAAAGAAGGGGGAGGTGCTGTTTGGGACATTTTCCGGAGACAGGATGTTCCCAAGCTCCAGGAGTATCTCAGAAAACATCACAGGGAATTCAGGCATACCCACTGCTCTCCAGTTGAGCAGGTTGTTCACCCTATTCATGATCAAACTTTCTACCTGACTTTGCATCACAAAAGAAAGCTGAAGGAGGAGTTCGGAGTTGAACCTTGGACATTTGTACAAAAACTTGGAGAGGCAGTCTTTATACCTGCTGGATGTCCTCATCAAGTTAGGAATCTTAAGTCATGCATAAAGGTTGCTCTTGATTTTGTCTCACCTGAAAATATTCATGAGTGCGTGCGTTTGACTGAGGAATTTCGTGCTCTTCCGCATAACCACAGAGCTAAGGAGGACAAATTAGAGGTAAAGAAAATGTCTCTTCATGCGCTAAGACAAGCTGTTGATAATTTGGAGCAGTTAACAGGGGATGAAGCTGCAGTTCCATCACCACCAGAAACTACAGAGCCACCTACAGATTCTCATCAATCATCTGAATGA 2589 46.31 MAKSKKKDVDLPPPDHLRCNRNDGKGWRCRDYKLEGHNLCQYHHDSAISRSQKSKPDRKPKTKPQPKPKPKTEAEPKPQMEPESKPDAKLKISRSKRAPGRSGAKSSDATLRSDAARGSEVGQGREVARGGDGGRRYPSRGKLLRRLLDSDTDQEWRGNGSNAKKRNAQEDECRCCHQCQKSDREVVRCRKCQRKRFCHPCIERWYPRVSKEAIAEACPFCSGNCNCKACLDRDTKTLEPEMSKDDKIKHSKYLVKVLLPFLEQFDHEQEMEREIEAKIQGLSPPEIQVQQAVLREDERVYCNNCRTSIVDFHRNCPNCSYDLCLTCCREIQSNFCVSSSSKDPGSTICEWKVKENGDIPCAPKEMGGCGHGRLDLKCMFSETWVSELKEKAEGLVKTHKLTDVLGIPACSCSCFKLNSEIDFDNKKLRKAAAREDSFDNYLYCPSESDILQGDLVHFQSHWMKGEPVIVSDVLEFTSGLSWEPMVMWRAFRKVSYTKSSQLAEKAIDCLDWCEVEINIHQFFKGYSEGRAHRNLWPEMLKLKDWPPSNLFQERLPRHGAEFISSLPYLEYTHPRSGLLNLAAKLPQKSLKPDLGPKTYIAYGVVEELGRGDSVTKLHCDMSDAVNVLMHTAEVTLSSQQLAVIEKLKKCHAAQDQKELFAAIHTEQGEFSDDHMASGNKLVGFDKEGGGAVWDIFRRQDVPKLQEYLRKHHREFRHTHCSPVEQVVHPIHDQTFYLTLHHKRKLKEEFGVEPWTFVQKLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIHECVRLTEEFRALPHNHRAKEDKLEVKKMSLHALRQAVDNLEQLTGDEAAVPSPPETTEPPTDSHQSSE* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9601200 9680561 + Vvi4g683 Vvi4g683 785462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g683 862 Coils Coil 817 837 - -
Vvi4g683 862 MobiDBLite consensus disorder prediction 45 141 - -
Vvi4g683 862 Gene3D Cupin 442 813 - -
Vvi4g683 862 Pfam JmjC domain, hydroxylase 685 787 IPR003347 -
Vvi4g683 862 MobiDBLite consensus disorder prediction 48 94 - -
Vvi4g683 862 ProSiteProfiles WRC domain profile. 13 58 IPR014977 -
Vvi4g683 862 ProSiteProfiles Zinc finger RING-type profile. 173 222 IPR001841 -
Vvi4g683 862 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 837 IPR045109 GO:0032454|GO:0033169
Vvi4g683 862 MobiDBLite consensus disorder prediction 837 862 - -
Vvi4g683 862 SUPERFAMILY Clavaminate synthase-like 454 836 - -
Vvi4g683 862 ProSiteProfiles JmjC domain profile. 574 804 IPR003347 -
Vvi4g683 862 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g683 862 Pfam WRC 14 55 IPR014977 -
Vvi4g683 862 CDD cupin_RmlC-like 728 788 - -
Vvi4g683 862 SMART cupin_9 555 804 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g683 K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] - vvi:100244450 1339.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g683 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00805 Cam01g0827 Cec01g0825 Cco01g0857 Clacu01g0820 Cmu01g0788 Cre09g1717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005729 2 1 1 2 2 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 3 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14774 PF02373 JmjC 7.00E-17 CL0029 Vvi TR