Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g694 ATGCTCACATTCTTTAATGTATGCCCTAGTATTGACGGGATTTATTTAGGTTCACATGATAATTTGTCGTCCAGTCTTCAATTTTTAAAGTACTTGTATTTTTCATATCACGCATGCTTGCCCTTTTATACGTGTGATAACAAAACATTGCGTAATCTATGCCCCAACTCGATTTTCGGACAATTTTATTTATACCATTCATTGCTGCTAATTCCAAGAACTCACCTCCAAACTCCAATTCAGAGGCCACTAGGCTTGGTGTCCTTGATGACAGTGGGAATATGGTGGTGGTGGTTGATGAGAGAAGCTGTTTCAGACCCACAAACCAACCTGCTAATCCAGGGATGCAGTACATACAGCCCCCCCAACCTTTCCGACTTCTACAGCAACCTCAACGACACCTTGTCTGACCTCAAAACGCAGTTAAGCGACAACAAGCGCTTCGCCACGGCACAGAGAACAAGGAGTACGGGCACTGTCTACGGCCTGGCGCAGTGCAGAAATTACATGTCCACTGAGGACTGTGTGGCTTGCTTCAACACTGCTCAGTCAGACATACGCAATTGCTCTTCAGCCAATGGCGCTCGCGTTATCTACGATGGCTGCTTCCTCAGATATGAGAGCAGCAGCTTCTACGACGAAACTACTGGCTCTGGCAATACTGCAATTTGTGGCAACCAGACTGCAGCACAGGCGACTGCTTTCCAAGAAGCAGTAAACGGACTATTATCAGATCTTGAAACTGCAACACCCAGAACTAATGATTCCTATGCAGCATATAAAAAGGAAGTGGTCGGAGGTGGTGGTGCAACCGTGTATGGGGTGGCTCAATGTGTTGAAAGGGCGAGTGCAAGTGCTTGCAAAGAGTGCTTGAAAGTCGCAGATGGAAACATAAAGAGTTGTCTTCCCAGTACAGACGGTAGGGCTGTTGATGCAGGATGTTTCCTGAGGTACTCAAACACGCCTTTCTTTGCTGATAACCAGACCACGGATATCTTGCCCTTCCTAGAAAAAGGAGGTTCAACCAAGAAGAAAGCCATTATAGGAGGAGTGGTTGGAGGTGTATGCCTATTCTTGCTCCTCATTATGTTGTTTGTATGGCATCAGCACTCAAGAAGGGCAAAGGCAGCTCCTAGAGGGGTACCCGAGTTGCAAGGCCCAGTAAATTACAGCCACAGAGACTTGAAATCTGCAACAAAAAATTTTAGAGCTGAATATAAACTTGGAAAGGGAGGCTTTGGTGATGTCTATAAGGGTTATTTGAAAAATGGGACAACGGTTGCAGTTAAGAAGCTAATTATAGGTCAACCCAATAGGGCAAAGGCAGATTTTGAGAGTGAAGTCAAGATCATAAGTAATGTTCATCATCGCAATCTCCTCCGTCTTCTTGGATGTTGTAAAAAAGGATCAGAACTACTTCTTGTCTATGAATACATGGTCAATAGCAGCCTTGATAAATTCTTATTTGGCGAAAGGCGAGGAGCTCTCAACTGGAGACAACGGTTTGATATAATAGTTGGGACAGCAAGGGGTCTTGCCTATTTACATGAGGAATTCCATGTCTGTATTATACACCGTGATATAAAATCCAGCAATATTCTTCTTGACAATGATTTCCAGCCCAGAATTGCAGATTTTGGGTTGGCAAGGCTTCTACCAGAGGACCAGACTCATCTCAGCACAAAAGTCGCTGGAACATTGGGTTATACTGCACCTGAATATGCAATCCTTGGACAGTTATCTGAAAAGGTTGATACCTATAGCTATGGGGTTGTCGTCCTTGAAATCATAAGTGGCCGCAAGTGCAATGAAATGAAGGCTGAAGATGTCACCGAATACTTGCTTGAACGGGCATGGACACTTTACGAGAATGACAAGCATTTAGAGTTGGTGGACGAGAGCTTAGACCCTGAGGAATATAAAGCCGAAGAAGTGAAGAAGATCATAGAGATTGCTTTGATGTGCACTCAGTCATCAGTTTCTATGAGGCCCACAATGTCTGAAGTAGTTTTCTTGCTACGCAGCAAGATCAGCTCACTTGAGCATGGACCCCCAACTAGGCCTGCTTTCATTGATTCCGACTATAGAGCTCATGGAGACTCTTCCACCGCTACTGGGTCCTCTGCTTCCAATGCCACTGCTTCTATTTCTCACTTCTCAGATCATCGTTCAATAGCTCCTATAATGCTACCATCCAATTTCACAAAATCTAACCTTGAGATTAATTTAGTAAATCCGCCAAGTTTACAGTACTATATTAACCATTCAAGACAATTTGAACATAATACTATTCTATAA 2298 43.82 MLTFFNVCPSIDGIYLGSHDNLSSSLQFLKYLYFSYHACLPFYTCDNKTLRNLCPNSIFGQFYLYHSLLLIPRTHLQTPIQRPLGLVSLMTVGIWWWWLMREAVSDPQTNLLIQGCSTYSPPNLSDFYSNLNDTLSDLKTQLSDNKRFATAQRTRSTGTVYGLAQCRNYMSTEDCVACFNTAQSDIRNCSSANGARVIYDGCFLRYESSSFYDETTGSGNTAICGNQTAAQATAFQEAVNGLLSDLETATPRTNDSYAAYKKEVVGGGGATVYGVAQCVERASASACKECLKVADGNIKSCLPSTDGRAVDAGCFLRYSNTPFFADNQTTDILPFLEKGGSTKKKAIIGGVVGGVCLFLLLIMLFVWHQHSRRAKAAPRGVPELQGPVNYSHRDLKSATKNFRAEYKLGKGGFGDVYKGYLKNGTTVAVKKLIIGQPNRAKADFESEVKIISNVHHRNLLRLLGCCKKGSELLLVYEYMVNSSLDKFLFGERRGALNWRQRFDIIVGTARGLAYLHEEFHVCIIHRDIKSSNILLDNDFQPRIADFGLARLLPEDQTHLSTKVAGTLGYTAPEYAILGQLSEKVDTYSYGVVVLEIISGRKCNEMKAEDVTEYLLERAWTLYENDKHLELVDESLDPEEYKAEEVKKIIEIALMCTQSSVSMRPTMSEVVFLLRSKISSLEHGPPTRPAFIDSDYRAHGDSSTATGSSASNATASISHFSDHRSIAPIMLPSNFTKSNLEINLVNPPSLQYYINHSRQFEHNTIL* 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10076960 10087441 - Vvi4g694 Vvi4g694 785473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g694 765 SUPERFAMILY Protein kinase-like (PK-like) 385 673 IPR011009 -
Vvi4g694 765 ProSiteProfiles Gnk2-homologous domain profile. 109 211 IPR002902 -
Vvi4g694 765 ProSitePatterns Protein kinases ATP-binding region signature. 408 431 IPR017441 GO:0005524
Vvi4g694 765 SMART serkin_6 402 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g694 765 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 99 715 - -
Vvi4g694 765 CDD STKc_IRAK 408 670 - -
Vvi4g694 765 Gene3D Phosphorylase Kinase; domain 1 376 478 - -
Vvi4g694 765 Pfam Salt stress response/antifungal 224 320 IPR002902 -
Vvi4g694 765 Pfam Salt stress response/antifungal 118 208 IPR002902 -
Vvi4g694 765 Gene3D - 219 323 IPR038408 -
Vvi4g694 765 Gene3D - 108 211 IPR038408 -
Vvi4g694 765 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 99 715 - -
Vvi4g694 765 Gene3D Transferase(Phosphotransferase) domain 1 479 682 - -
Vvi4g694 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Vvi4g694 765 ProSiteProfiles Protein kinase domain profile. 402 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g694 765 Pfam Protein tyrosine and serine/threonine kinase 405 670 IPR001245 GO:0004672|GO:0006468
Vvi4g694 765 ProSiteProfiles Gnk2-homologous domain profile. 217 323 IPR002902 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76629 PF07714 PK_Tyr_Ser-Thr 8.80E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g694 - - vvi:100256473 1222.61