Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g695 ATGGTGCAGTGCAGAAACTACATGTCCGCTGAGGACTGCTTGGCTTGCTTCGCCGATGCTCAGTCGCTCATCCGCAGATGCGGTGCTGCCAACGGCGCTCGCGTCATCTACGATGGCTGCTTCCTCAGGTATGAGAGCAGCAGCTTCTACGACCAAACCACTCTCGCTGGAAATGCTCCAATTTGTGGGAACGACACGGCATCGCAGGTGACTGCTTTTCAATCAGCAGTAGAAGGACTGATAGCAGATCTTGAAGTTGCAACACCCAGGATTAATCGTTTCTATGCGGCATATAAAATGGAAGTGGTTGGTGGTGGTGGTGCAACAGTGTATGGGGTGGCACAATGTGCTGAAACAGCCAGTCAGACTGCTTGCCAAGAATGCTTGCAAGTGGCAAAGAGCAATATAAACAGTTGTCTTCCCAGTAAAAACGGCCGGGCTATTGATGCTGGATGTTTCCTGAGGTACTCAGATGTGGCCTTCTTTGCTGACAACCAGACAACTAATATCACACCCTTCTTACAAAAAGGAGGTTCAAACAAGAAGAAAGCGATTATTGGAGGAGTGGTTGGAGGTGTAGGTATTGTTTTGATTATCGTAGTTTTGCTTTTATGGTATCGGACCTATCGGTCATCAAGAAAGGCAAAGCTGGCTTCTACAGGTGATTTATTAGGTGTGACAGAGTTGCAAGGCCCAGTGAATTACAGCTACAATGATTTGAAAACTGCAACCAGGATGTTCAGTGAAGAAAATAAACTTGGAGAGGGAGGATTTGGTGACGTCTATAAGGGTCATTTGAAGAATGGGAAAATTGTTGCTGTTAAGAAACTATTTATAGGTCAAACAGACGGGGCAAAGGCAAATTTCGAGAGTGAAGTAAAGCTTATAAGTAATGTTCATCATCGCAATCTCATCCGTCTTCTTGGATGTTGTAGCAAAAAATCAGAATTGCTTCTTGTGTACGAGTACATGGCAAATAGCAGCCTGGATAAATTCTTATTTGGAGAAAAGCGAGGGGCTCTCAACTGGAAACAACGTTTGAATATAATTGTTGGTATAGCGAGGGGTCTTGCGTATTTACATGAGGAGTTCCATGTGTGTATCATACACCGAGACATAAAACCTAACAATGTTCTTCTTGATGACGATTTCCAACCCAGAATTGCAGATTTTGGATTGGCAAGGCTTCTACCTGAGGACCAGACTCATGTTAGCACCAAATTTGCTGGAACATTGGGTTACACTGCACCTGAATATGCAATCCATGGACAGCTATCTGCGAAGGCTGATACCTACAGCTATGGTGTTGTAGTCCTTGAAATCATAAGCGGCCAAAGGTGCAACGAGATGAAGGTTGAACCTGTCACTGAATTCTTGCTTGAACGGGCATGGAAACTGTACGAGAATGACAATCACTTGGAGTTGGTGGATGAGAGCTTAGACCCTGAGGAATATGATGCAGAAGAAGTGAAGAAAATCATAGAGATTGCTCTGTTGTGCACTCAATCATCAGCTTCCATGAGGCCCACAATGTCTGAAATTGTTGTTATGCTATACAGCAAGGACGCACTTCAGCATGGTCCCCCAACCAGGCCCACCTTCATTTCTTCCAATAACAGAGCTGGCGGAGATACTTCCGCGTCCACTTGGGACTACGCTTCCAATGCCACTGCCTCTTTTTCTGGGGTCTCAGGTCGTTAA 1701 45.21 MVQCRNYMSAEDCLACFADAQSLIRRCGAANGARVIYDGCFLRYESSSFYDQTTLAGNAPICGNDTASQVTAFQSAVEGLIADLEVATPRINRFYAAYKMEVVGGGGATVYGVAQCAETASQTACQECLQVAKSNINSCLPSKNGRAIDAGCFLRYSDVAFFADNQTTNITPFLQKGGSNKKKAIIGGVVGGVGIVLIIVVLLLWYRTYRSSRKAKLASTGDLLGVTELQGPVNYSYNDLKTATRMFSEENKLGEGGFGDVYKGHLKNGKIVAVKKLFIGQTDGAKANFESEVKLISNVHHRNLIRLLGCCSKKSELLLVYEYMANSSLDKFLFGEKRGALNWKQRLNIIVGIARGLAYLHEEFHVCIIHRDIKPNNVLLDDDFQPRIADFGLARLLPEDQTHVSTKFAGTLGYTAPEYAIHGQLSAKADTYSYGVVVLEIISGQRCNEMKVEPVTEFLLERAWKLYENDNHLELVDESLDPEEYDAEEVKKIIEIALLCTQSSASMRPTMSEIVVMLYSKDALQHGPPTRPTFISSNNRAGGDTSASTWDYASNATASFSGVSGR* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10121210 10125994 - Vvi4g695 Vvi4g695 785474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g695 566 Pfam Protein tyrosine and serine/threonine kinase 250 517 IPR001245 GO:0004672|GO:0006468
Vvi4g695 566 Gene3D Transferase(Phosphotransferase) domain 1 324 527 - -
Vvi4g695 566 Pfam Salt stress response/antifungal 1 46 IPR002902 -
Vvi4g695 566 Pfam Salt stress response/antifungal 62 158 IPR002902 -
Vvi4g695 566 ProSitePatterns Protein kinases ATP-binding region signature. 253 276 IPR017441 GO:0005524
Vvi4g695 566 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 563 - -
Vvi4g695 566 ProSiteProfiles Gnk2-homologous domain profile. 1 49 IPR002902 -
Vvi4g695 566 ProSiteProfiles Protein kinase domain profile. 247 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g695 566 Gene3D Phosphorylase Kinase; domain 1 224 323 - -
Vvi4g695 566 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 563 - -
Vvi4g695 566 CDD STKc_IRAK 253 518 - -
Vvi4g695 566 SUPERFAMILY Protein kinase-like (PK-like) 229 520 IPR011009 -
Vvi4g695 566 ProSiteProfiles Gnk2-homologous domain profile. 55 161 IPR002902 -
Vvi4g695 566 SMART serkin_6 247 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g695 566 Gene3D - 58 161 IPR038408 -
Vvi4g695 566 Gene3D - 1 49 IPR038408 -
Vvi4g695 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76630 PF07714 PK_Tyr_Ser-Thr 8.50E-51 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g695 - - vvi:100241075 1103.2