Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g697 ATGATTCTAACAATTTGTTTTAGGAAGATTTTTTCATATTATTGTACTCACTTGATTGAACCATTTTTGAATAGAGCACGAGATGATGCTGGAAGCAGTGCCCAGAAGAGTTTATTAGAGAGTAACAATCTTAAAGCAATGGTTAGAATAGGCTCCAAAGGAAGTTTCATCAGCATATCACAGATGACTACTTGTAACCCAAATTACATGTTTCGAGAACACGCTGAAGATTTGAAAACTATCTAA 246 34.15 MILTICFRKIFSYYCTHLIEPFLNRARDDAGSSAQKSLLESNNLKAMVRIGSKGSFISISQMTTCNPNYMFREHAEDLKTI* 82
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10272950 10274688 - Vvi4g697 Vvi4g697 785476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g697 81 Pfam RNA polymerase Rpb1, domain 4 18 65 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vvi4g697 81 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 22 65 - -
Vvi4g697 81 PANTHER DNA-DIRECTED RNA POLYMERASE 22 65 IPR045867 GO:0003899|GO:0006351
Vvi4g697 81 Gene3D - 12 68 IPR038120 -
Vvi4g697 81 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 16 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g697 K03006 RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] - cpap:110822512 75.8701
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .