Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g699 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGCAAGGGCATGAAGGGGAGAAAAAGTGTTTGAATTCAGAGCTATGGCATGCTTGTGCTGGCCCTCTTGTGTCCCTGCCTACCGTTGGGAGCCGTGTGGTTTACTTTCCTCAAGGTCACAGTGAGCAGGTTGCTGCCACAACTAACAAAGAGGTTGATGGGCACATACCCAATTACCCGAGCTTGCCACCGCAGTTGATCTGCCAACTTCACAATGTCACAATGCATGCAGATGTGGAAACTGATGAAGTGTATGCACAAATGACTTTGCAGCCACTTACACCGCAAGAGCAAAAGGATACATTTCTTCCTGTGGAGTTGGGTATCCCGAGCAAGCAGCCCACCAATTACTTTTGCAAGACTCTCACAGCAAGTGATACTAGTACCCACGGGGGGTTCTCTGTTCCTCGTCGCGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCTCAGCAGCCTCCAGCTCAGGAACTTATTGCAAGGGATCTCCATGATGTTGAGTGGAAGTTCAGGCATATTTTTCGAGGTAGACAGCCGAAACGACATCTTCTTACAACAGGATGGAGTGTGTTTGTCAGTGCCAAAAGACTTGTTGCTGGAGATTCTGTCCTATTTATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATTCGTCGTGCTACTAGGCCACAAACTGTGATGCCATCTTCTGTTTTATCAAGTGACAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCCACTAATAGCTGTTTCACAATCTTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCTCTTTCGAAATATGTTAAAGCAGTATTTCACACTCGTGTTTCTGTTGGAATGCGTTTTCGGATGCTTTTTGAGACCGAGGAATCAAGTGTTCGTAGGTACATGGGTACGATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCGGTTAAGGTTGGTTGGGATGAGTCAACTGCAGGTGAGAGGCAGCCAAGGGTATCATTGTGGGAAATTGAGCCTTTAACAACTTTCCCCATGTATCCATCATTGTTTCCCCTCAGACTAAAACGACCCTGGCATCCTGGGGCCTCATCTTTGCATGACAGCAGAGACGAAGCTGCTAATGGCTTAATGTGGCTAAGGGGAGAAACTGGAGACCAAGGTCTTCAGTCACTGAATTTTCAAACTGTTGGTATGTTTCCTTGGACGCAGCAGAGGCTGGATCCAACATTTCTAGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCAGCTGGGTTGCAGAATTTAGGAAGCGGGGATCCTCTGAAACAGCAATACATGCAGTTTCAGCAGCCTTTCCAATATCTTCAACAGACGGGCAGCAATAATCCATTAATCATTTCAGATTCAAAGTGA 1461 46.34 MKLSTSGLGQQQGHEGEKKCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPVELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGASSLHDSRDEAANGLMWLRGETGDQGLQSLNFQTVGMFPWTQQRLDPTFLGNDHNQQYQAMLAAGLQNLGSGDPLKQQYMQFQQPFQYLQQTGSNNPLIISDSK* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10402894 10446692 + Vvi4g699 Vvi4g699 785478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g699 486 SMART B3_2 128 231 IPR003340 GO:0003677
Vvi4g699 486 CDD B3_DNA 127 229 IPR003340 GO:0003677
Vvi4g699 486 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 481 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi4g699 486 Pfam B3 DNA binding domain 128 230 IPR003340 GO:0003677
Vvi4g699 486 ProSiteProfiles B3 DNA-binding domain profile. 128 231 IPR003340 GO:0003677
Vvi4g699 486 PANTHER AUXIN RESPONSE FACTOR 8 1 481 - -
Vvi4g699 486 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi4g699 486 Gene3D - 293 365 - -
Vvi4g699 486 Gene3D - 126 231 IPR015300 -
Vvi4g699 486 SUPERFAMILY DNA-binding pseudobarrel domain 111 258 IPR015300 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14776 PF02362 B3 3.70E-20 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g699 - - vvi:100258129 965.681