Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g7 ATGGAGAAGAAATCCGGTGGTGGTGGAGGTGTTGAAGACATTTACGGTGAGGATAGTGCCACGGAGGACCAGCTTGTCACTCCCTGGACTGTTTCTGTTGCTAGCGGTTATACCCTGTTGCGGGATCCACACCACAACAAAGGGCTTGCCTTCACTGAGAACGAGAGAGATGCCCATTACTTGCGTGGACTTTTGCCCCCAGCAGTCCTGAATCAGGATCTTCAGGAGAAGAGATTGATGCACAATCTTCGCCAATATAAAGTTCCGTTGCAAAGGTACATGGCTATGATGGATCTTCAGGAGAGGAATGAAAGGTTGTTTTACAAGCTTCTTATTGATAATGTTGAGGAACTGCTCCCAGTTGTCTACACTCCAACAGTTGGTGAGGCTTGCCAGAAATACGGGAGCATTTTCAGGCGTCCTCAGGGTCTTTACATCAGTTTGAAAGAGAAGGGAAAGATACTGGAAGTGCTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTCGTAACTGATGGTGAGCGTATTTTGGGGCTTGGGGATCTTGGCTGCCAGGGAATGGGAATACCTGTGGGAAAACTTTCTTTATATACAGCACTAGGTGGACTACGTCCTTCAGCATGCTTGCCTGTAACGATAGATGTTGGCACAAACAATGAGCAGCTGTTGAAGGATGAGTTCTACATTGGACTCAAGCAAAGGAGGGCAACTGGGCAGGAATATGCCGAGCTTCTACATGAGTTCATGTGTGCAGTTAAACAGAACTATGGGGAGAGGGTCCTTATACAGTTCGAAGATTTTGCAAACCACAATGCATTTGAGCTGCTCGCAAAATATAGCAAAACTCATCTTGTTTTCAACGATGATATTCAGGGTACAGCATCTGTGGTCCTAGCAGGGCTAATTGCTTCTCTGAAACTAGTAGGCGGGAGCTTAGCTGAGCATACTTTCCTGTTTCTCGGTGCTGGAGAGGCTGGAACTGGCATAGCAGAGCTCATAGCTCTTGAGATATCAAAACAGACAAAAGCTCCATTGGAAGAGACCCGTAAGAAGATTTGGCTTGTCGACTCAAAGGGACTGATTGTTCACTCTCGCATGGAATCACTTCAACACTTCAAGAAGCCTTGGGCTCATGATCATGAACCTATTAGGGCACTCTTAGATGCAGTCAAGTCTATCAAGCCGACAGTGTTGATAGGATCATCTGGAGTAGGGAAAACATTTACCAAGGAGGTGGTTGAGGCCATGACATCCTTCAACAAGAAACCTCTGATTCTTGCACTTTCCAACCCAACCTCACAATCTGAGTGTACTGCTGAAGAAGCTTATACATGGAGCAAGGGTCGTGCAATTTTTGCTAGTGGAAGCCCATTCGACCCAGTTGAATACAATGGCAAACTTTTTGTGCCTGGCCAGGCAAACAATGCTTACATATTTCCTGGATTTGGTTTGGGTTTGATCATGTCCGGTGCAATTCGCGTGCATGACGACATGCTTTTAGCTGCTTCGGAAGCTTTGGCTGCACAGGTGACACAGGAAAACTATGATAAGGGACTGATTTACCCACCATTCTGTAATATCAGAAAGATATCAGCTCACATTGCTGCTAATGTAGCTGCTAAAGCTTATCAACTTGGTCTTGCTAGTCGTCTCCCTCGACCTGAGCATCTTGTCAAGTATGCAGAGAGCTGCATGTACAGCCCTGTCTATCGCAGCTATCGCTGA 1728 46.12 MEKKSGGGGGVEDIYGEDSATEDQLVTPWTVSVASGYTLLRDPHHNKGLAFTENERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQYKVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPVTIDVGTNNEQLLKDEFYIGLKQRRATGQEYAELLHEFMCAVKQNYGERVLIQFEDFANHNAFELLAKYSKTHLVFNDDIQGTASVVLAGLIASLKLVGGSLAEHTFLFLGAGEAGTGIAELIALEISKQTKAPLEETRKKIWLVDSKGLIVHSRMESLQHFKKPWAHDHEPIRALLDAVKSIKPTVLIGSSGVGKTFTKEVVEAMTSFNKKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYNGKLFVPGQANNAYIFPGFGLGLIMSGAIRVHDDMLLAASEALAAQVTQENYDKGLIYPPFCNIRKISAHIAANVAAKAYQLGLASRLPRPEHLVKYAESCMYSPVYRSYR* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 105731 111628 + Vvi4g7 Vvi4g7 784786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g7 575 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 291 574 IPR036291 -
Vvi4g7 575 CDD NAD_bind_1_malic_enz 291 569 - -
Vvi4g7 575 PIRSF ME 12 575 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 ProSitePatterns Malic enzymes signature. 287 303 IPR015884 GO:0004471
Vvi4g7 575 SMART Malic_M_2 291 544 IPR012302 GO:0051287
Vvi4g7 575 Pfam Malic enzyme, N-terminal domain 100 280 IPR012301 GO:0004471
Vvi4g7 575 Gene3D - 34 288 IPR037062 GO:0004471
Vvi4g7 575 Pfam Malic enzyme, NAD binding domain 291 543 IPR012302 GO:0051287
Vvi4g7 575 PANTHER MALIC ENZYME 5 575 - -
Vvi4g7 575 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 19 290 IPR046346 -
Vvi4g7 575 SMART malic_2 100 281 IPR012301 GO:0004471
Vvi4g7 575 Gene3D - 289 575 - -
Vvi4g7 575 PRINTS Malic enzyme signature 106 130 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PRINTS Malic enzyme signature 166 195 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PRINTS Malic enzyme signature 202 224 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PRINTS Malic enzyme signature 262 280 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PRINTS Malic enzyme signature 287 303 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PRINTS Malic enzyme signature 318 334 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PRINTS Malic enzyme signature 421 437 IPR001891 GO:0004470|GO:0004471
Vvi4g7 575 PANTHER MALIC ENZYME-RELATED 5 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g7 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - vvi:100249166 1143.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g7 Vvi11g279 ECH
Vvi4g7 Vvi9g291 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135