Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g700 ATGCCATTAGGGGCTTCTGGGTTTCAGGGCTCTTTATTTGGTTGCGTGCAAGACCCTTCAGAGTTGTTGCAGAATGCAGGACAAGTTGATCCTCCAACTCCAAGCCGAACATTTGTCAAGGTTTACAAATCGGGATCGGTTGGGCGGTCATTAGACATCACCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGCTGGGTCAGATGTTTGGAATTGAGGGGAAACTAGAAAACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTGCAGAAAATGGGGAAACAGGGGATTGAATCAGGATTCAGCCCAAATAGTGCTCAAAGGATGAATAGCAGTGGAACTGATGATCGAGACCTTGTTTCTGGACTACCCTCTGCTGGGTCGCTCGAGTACTGA 492 48.37 MPLGASGFQGSLFGCVQDPSELLQNAGQVDPPTPSRTFVKVYKSGSVGRSLDITRFSSYHELREELGQMFGIEGKLENPLRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPEDVQKMGKQGIESGFSPNSAQRMNSSGTDDRDLVSGLPSAGSLEY* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10446716 10448235 + Vvi4g700 Vvi4g700 785479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g700 163 Gene3D - 33 125 - -
Vvi4g700 163 SUPERFAMILY CAD & PB1 domains 31 110 - -
Vvi4g700 163 ProSiteProfiles PB1 domain profile. 36 120 IPR000270 GO:0005515
Vvi4g700 163 PANTHER AUXIN RESPONSE FACTOR 8 1 136 - -
Vvi4g700 163 MobiDBLite consensus disorder prediction 126 163 - -
Vvi4g700 163 Pfam AUX/IAA family 33 121 IPR033389 -
Vvi4g700 163 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 136 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi4g700 163 MobiDBLite consensus disorder prediction 129 150 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14778 PF02309 AUX_IAA 5.20E-09 CL0072 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g700 - - vvi:100258129 333.569