Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g704 ATGGCCTCCTCCATTTCTGCAGTGATAGTAATGTGGGTGGTTGCAATGGCCGCGGCAGCAGCAGCATCATCACAGACATGGATTGAGGGTGAGGCTCTGCGCAGGAGCACTTGGTGGCGGTCTTACAACACTACTACAGGCCATTGTAATTGGCCAGGCATAAGCTGTAATGCGGGGGGAAGTGTCACTGAGATTTGGGCGGTTCCAACTCAAGAAAATGGGCTGCTTACCCAATTTAACTTCTCTTCATTTCCAAATCTGGTTCGACTAAATTTTAGCTCTCTTGGCCTGAATGGTGACATCCCACATCAAATAGGTACTCTCACAAAACTCACCCACCTTGATCTTTCTCACAACTTTCTTTCTGGTGAGCTGCCTCTTTCGCTGACTAACCTCACCAAGTTAGTGGAACTCAATCTTGGTTATAATCACATATCTGGCCAAATCCCAAGTGAAATTGGGAATCTGAGAAATTTGGTTGGCCTAGTCTTAGATTGTAACTATCTCAATGGTGTTATTCCTTCCATTCCTTCGGAGATCGGTGGCCTGGTTGCACTACGAAAACTTGATTTGAGTGTCAATAATATTAGTGGGACCATACCCCTCCAGTTCCAAAACTTCAACAGCTTAGAGTATTTGGATCTCTCTTACAATTATTTGGAGGGTTATGTACCCTTCGAACTGCATCTTCCATCTCTATTTCGAGCATTCGAACACAATAAAGGTTTGTGTGGTGACACCAAATTTGGCATTCCACCTTGCAGAAAAAGGAACAGAATCACAATCATCATCATTGTGGTCATTTGTTTATGCTCCGCCTTGCTGATTTCGTCTATAATTTTTGGAGTTCTATTAATTTGGAGGCGGAAGACGAGAAAACTTCAACCTGAGGAAGCAACTACCACACAAAATGGAGACATATTTTCAATATGGGATTATGATGGTAAGATTGCTTACGAAGACATCATTGAGGCGACGGAGGATTTCGACATCAAATATTGCATTGGGACTGGAGGTTATGGCAGTGTCTATAGAGCGAAATTGACCAATGGGAAAGAGGTTGCCTTGAAAAAACTTCACACCTTGGAAAGTCAGAACCCAACTTACATGAAAAGTTTTACAAATGAGGTGCGGGTGTTGTCAAAAATCCGACATCGAAATATCAGGGTGAATGTTGTTAAAAGCATTGCTAATGCCTTGTCCTACATGCATAATGACTGTATCCCTCCTCTGCTTCATAGAGACATATCAAGCGGTAATATTCTCTTAGATTCAGAATTCAGGGCCGTTGTATCTGATTTTGGAACAGCTAGATTGCTTGATCCTGATTCATCAAATCAAACCCTTCTTGCTGGCACTTATGGTTATGTTGCACCAGAACTTGCTTACACTATGGTTGTTACGGAAAAATGTGATGTATATAGCTTTGGGGTACTTACATTGGAGATAATGATGGGAAAGCATCCGAGAGAACTTGTCACTATCTTATCAACCTCTTCATCTCAAAATATAATGTTGGTGGATATATTAGATCCTCGTCTTGCACCCCATATTGATCCAGAAGTTATTGATAATGTGGTTCTCATCATAAGGTTGGCACTCAAATGCATCAATTTGAATCCGACATCCCGTCCAACAATGCAACATGTGTGCAAGGAATTTGAGACTTGCACCCCATTTCCTATACCCTTCCATGCTATTTCACTTGGGCAATCGAAAGATCAAGAAGTATGA 1734 41.87 MASSISAVIVMWVVAMAAAAAASSQTWIEGEALRRSTWWRSYNTTTGHCNWPGISCNAGGSVTEIWAVPTQENGLLTQFNFSSFPNLVRLNFSSLGLNGDIPHQIGTLTKLTHLDLSHNFLSGELPLSLTNLTKLVELNLGYNHISGQIPSEIGNLRNLVGLVLDCNYLNGVIPSIPSEIGGLVALRKLDLSVNNISGTIPLQFQNFNSLEYLDLSYNYLEGYVPFELHLPSLFRAFEHNKGLCGDTKFGIPPCRKRNRITIIIIVVICLCSALLISSIIFGVLLIWRRKTRKLQPEEATTTQNGDIFSIWDYDGKIAYEDIIEATEDFDIKYCIGTGGYGSVYRAKLTNGKEVALKKLHTLESQNPTYMKSFTNEVRVLSKIRHRNIRVNVVKSIANALSYMHNDCIPPLLHRDISSGNILLDSEFRAVVSDFGTARLLDPDSSNQTLLAGTYGYVAPELAYTMVVTEKCDVYSFGVLTLEIMMGKHPRELVTILSTSSSQNIMLVDILDPRLAPHIDPEVIDNVVLIIRLALKCINLNPTSRPTMQHVCKEFETCTPFPIPFHAISLGQSKDQEV* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10548707 10552163 - Vvi4g704 Vvi4g704 785483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g704 577 ProSitePatterns Tyrosine protein kinases specific active-site signature. 411 423 IPR008266 GO:0004672|GO:0006468
Vvi4g704 577 Gene3D Ribonuclease Inhibitor 174 247 IPR032675 -
Vvi4g704 577 Gene3D Transferase(Phosphotransferase) domain 1 391 562 - -
Vvi4g704 577 Pfam Leucine rich repeat 157 220 IPR001611 GO:0005515
Vvi4g704 577 SUPERFAMILY Protein kinase-like (PK-like) 310 554 IPR011009 -
Vvi4g704 577 SMART LRR_typ_2 132 156 IPR003591 -
Vvi4g704 577 SMART LRR_typ_2 183 206 IPR003591 -
Vvi4g704 577 SMART LRR_typ_2 108 131 IPR003591 -
Vvi4g704 577 Gene3D Phosphorylase Kinase; domain 1 290 390 - -
Vvi4g704 577 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Vvi4g704 577 SUPERFAMILY L domain-like 37 233 - -
Vvi4g704 577 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 389 573 - -
Vvi4g704 577 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 26 89 - -
Vvi4g704 577 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 82 388 - -
Vvi4g704 577 ProSiteProfiles Protein kinase domain profile. 329 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g704 577 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 26 89 - -
Vvi4g704 577 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 82 388 - -
Vvi4g704 577 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 389 573 - -
Vvi4g704 577 Gene3D Ribonuclease Inhibitor 25 173 IPR032675 -
Vvi4g704 577 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Vvi4g704 577 Pfam Protein kinase domain 391 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g704 - - - vvi:100261564 838.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000167 2 3 1 5 2 3 8 4 3 5 5 4 5 5 6 4 3 12 11 5 5 10 5 5 9 7 6 6 2 21 172
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76631 PF00069 Pkinase 1.00E-23 CL0016 Vvi PK