Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g707 ATGGGTGAAGAATCCTTAGCTACAGTTCCATTTGACAGAGCTGTTGAACAGGCGATTGTGACTTTGAAAAAGGGTGCTTATCTTTTGAGGTGTGGACGGAGAGGGAAGCCGAAGTTCTGCCCTTTTAGGCTATCTACGGATGAGAAGTTTTTGATTTGGTATTCCGGACAGGAGGAAAAACAATTGAGATTGAGCTCAATTACAAAGATTATACCTGGGCAAAGAACTGTAAATTTTCAGAGGCAGCTTCAAGAAGAAAGGGAGTGTCGGTCCTTTTCACTTGTCTATGCTAACGGCGAACGGTCACTTGATCTGATATGCAAGGACAAAGCACAGGCCGATTCTTGGTTTTTAGGCTTGAAAGCTGTGATATCCAGATGCCAACATCCTAGACAATTGAGCACATTCAGAAACTGCGTAGGCGTACAAACTTGTTTCAATAGCCCAGCAGGTTATTTTCGAAGAAAGCATAATCTAGGACTTCTAGAGGATACACCGAAGTTTAGTCAGGTACGCAGCTTATGTGGAAGCCCTACACAGTCACTTTCAGAGAGGTGTTTTTCTGATGGCTTATCGTATTCTGCTGATAGCTTTTATTCATCAGAATCGAGTGTATCGAATAATGATATTTTGAGGGATGTCATGATATGGGGAGAAGGAATAGAAGGAGGGATCTTAGGAGGTGGGGTCTATAGGTTTGGTAACCAAAATGGGATGCAATCGGATGCTTTGCTTCCCAAGTTACTAGAATCCACCACAATGTTAGATGTGCGAGAAATATCTTTAGGGGGGAAGCATGCTGCCCTAGTTACCAAACATGGGGAAGTCTTTTGCTGGGGTGAGGGGAGTGGGGGAAGGCTTGGGCATAAAGTTAACATGGATATGGGCAACCCAAAAATTGTTGAATCCCTTACTGGTGTCCTTGTAAAATCAGTTTCCTGTGGGGAATATCAAACGTGTGCTCTGACGCATTCTGGTGAACTCTATACATGGGGTGACAATGGTTCTGGTATAGATTTAGTGGGTGAGAGGAGAAAGAGAAGTCAGTGGATACCAAGTCGGCTTTCTGGTCCTTTGAATGGTACAAGTATATCAAATGTTGCTTGTGGGGAATGGCATATGGCAATTGTGTCCACTTCTGGACAATTATTTACCTATGGAGATGGAACTTTTGGGGTTCTTGGGCATGGAAAGCTTGAAAGCATTTCTCAACCGAAAGAAGTTGAGTCTCTCAGTGGTTTATGGGTTAAAGCTGCTGCATGTGGACCATGGCATACAGCCGCTATTGTGGAAGTCAGGGCTGACCGCCTGAAGTTCAACACTAAAGGTGGGAAGTTGTTTACATGGGGTGATGGGGATAAAGGAAGACTTGGGCATGGTGATCAAGAGAGGAAGCTTTTACCAACATGTGTTGCACAACTTGTGGATCATGATTTTGTTCAGGTTTCTTGTGGGAGAATGTTGACTGTCGGACTTACATGTTTGGGGACAGTTTACACAATGGGAAGATTAGGTGATACTGAAGATAGGAACTCCCCAGCTGTAGTGGAGGAGTTGAGATATAGACAAGTAGAAAGTATTGCTTGTGGATCAGGTTTTACTGCTGCAATCTGTTTACACAAGTCTATATCTAGCACTGACCAATCAGCTTGTAGTGGATGTAGAATGGCTTTTGGGTTTACAAGGAAGAAGCATAATTGTTATAATTGTGGTCTTCTATTCTGTCGTGCATGTAGTAATAAGAAGGTTCTAAATGCATCTCTAGCGCCTAATAAAAAAAAGCCTTTTCGAGTTTGTGATCCATGCTACACCTATCTGCAAAGGATTAAACATTCAAGTAGACTATTGAAGCTGGAAAATCATAGTCCAAGACAGCTATTGATGACACAAAAGACGTCCCAATCCTATGAAAAGAAACCATTCAAAAACCAAGTGGAAAACCAGCAGACTGTAGAACCAGTTTCTTCTTTGTCAAATGGACTGCCTAGATGGGGTCAAGTTCCATGCCCTTTTCTATTTGAAAAATATTGTAGAGAAAATTCTATAGCATTGAAAGATTTTCCAGACACAGATAAGATTCTCATAGAAGAAGTTGAGAGGCTGAGATCTGAGGCTAGGAGCCTAGAAAAGCTATGTCAAATGAGAAGTGAGAAGATTCAAGAATGTCAACAAAAATTACAAGAAACATGGTCTCTAGCAAGGGAGGAAGCTGCTAAGTGTAAAGCAGCAAAGGAGGTTATAAAAGCTTTATCATCAAGGCTTCATACGATGTCAGAGAAACTTTCTTCTGAAAGAGATGCAAAGGATGGAATTGATTCAAAGCTGCCTCAAATCATTACAAGATATGTAGATACTCCGAAAGAGAGACAGCTAGATAGTCTGTGTGGCTCTCCAATTGTGTTCTCTAATTCCCTGAGATCTATGTATGGGAGAGATGAGTGTCAAGGCCATACTAGATCAGTAGAGGATTCATGCCTCGAGAAAATAGATCCTAGACAGAATGGAACTAAGCCATCCAAGCTTGAATGGGTGGAGCAGTATGAACCTGGCGTATATATCACATTCATAACTTTAGCAAGTGGGCAAAGAGGCCTCAAGCGGGTGAGATTCAGCCGCAAACGATTTACTGAGAAGGAAGCAGAGCGATGGTGGGAAGAGAATCAAATAGGAGTATATCAAAATTATGGGATTGAAGGATACATAAGCTCCAGCCAAAATAAGATGAAGGAATCTACATGGTTGTGCTCCTCAATAAAATCAAGAGCTCAGTATATTTGA 2778 41.86 MGEESLATVPFDRAVEQAIVTLKKGAYLLRCGRRGKPKFCPFRLSTDEKFLIWYSGQEEKQLRLSSITKIIPGQRTVNFQRQLQEERECRSFSLVYANGERSLDLICKDKAQADSWFLGLKAVISRCQHPRQLSTFRNCVGVQTCFNSPAGYFRRKHNLGLLEDTPKFSQVRSLCGSPTQSLSERCFSDGLSYSADSFYSSESSVSNNDILRDVMIWGEGIEGGILGGGVYRFGNQNGMQSDALLPKLLESTTMLDVREISLGGKHAALVTKHGEVFCWGEGSGGRLGHKVNMDMGNPKIVESLTGVLVKSVSCGEYQTCALTHSGELYTWGDNGSGIDLVGERRKRSQWIPSRLSGPLNGTSISNVACGEWHMAIVSTSGQLFTYGDGTFGVLGHGKLESISQPKEVESLSGLWVKAAACGPWHTAAIVEVRADRLKFNTKGGKLFTWGDGDKGRLGHGDQERKLLPTCVAQLVDHDFVQVSCGRMLTVGLTCLGTVYTMGRLGDTEDRNSPAVVEELRYRQVESIACGSGFTAAICLHKSISSTDQSACSGCRMAFGFTRKKHNCYNCGLLFCRACSNKKVLNASLAPNKKKPFRVCDPCYTYLQRIKHSSRLLKLENHSPRQLLMTQKTSQSYEKKPFKNQVENQQTVEPVSSLSNGLPRWGQVPCPFLFEKYCRENSIALKDFPDTDKILIEEVERLRSEARSLEKLCQMRSEKIQECQQKLQETWSLAREEAAKCKAAKEVIKALSSRLHTMSEKLSSERDAKDGIDSKLPQIITRYVDTPKERQLDSLCGSPIVFSNSLRSMYGRDECQGHTRSVEDSCLEKIDPRQNGTKPSKLEWVEQYEPGVYITFITLASGQRGLKRVRFSRKRFTEKEAERWWEENQIGVYQNYGIEGYISSSQNKMKESTWLCSSIKSRAQYI* 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10683929 10694055 - Vvi4g707 Vvi4g707 785486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g707 925 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 608 IPR013083 -
Vvi4g707 925 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 212 273 IPR000408 -
Vvi4g707 925 Pfam Regulator of chromosome condensation (RCC1) repeat 380 429 IPR000408 -
Vvi4g707 925 Pfam Regulator of chromosome condensation (RCC1) repeat 444 490 IPR000408 -
Vvi4g707 925 Gene3D - 14 132 IPR011993 -
Vvi4g707 925 Pfam Transcription factor regulating root and shoot growth via Pin3 842 895 IPR013591 -
Vvi4g707 925 ProSiteProfiles BRX domain profile. 841 896 IPR013591 -
Vvi4g707 925 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 204 503 - -
Vvi4g707 925 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 504 898 - -
Vvi4g707 925 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 207 - -
Vvi4g707 925 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 432 IPR000408 -
Vvi4g707 925 SUPERFAMILY FYVE/PHD zinc finger 544 618 IPR011011 -
Vvi4g707 925 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 380 IPR000408 -
Vvi4g707 925 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Vvi4g707 925 Pfam FYVE zinc finger 546 607 IPR000306 GO:0046872
Vvi4g707 925 Gene3D - 342 552 IPR009091 -
Vvi4g707 925 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 545 607 IPR017455 -
Vvi4g707 925 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Vvi4g707 925 PANTHER F12P19.9 PROTEIN 204 503 - -
Vvi4g707 925 PANTHER F12P19.9 PROTEIN 14 207 - -
Vvi4g707 925 PANTHER F12P19.9 PROTEIN 504 898 - -
Vvi4g707 925 SUPERFAMILY PH domain-like 14 124 - -
Vvi4g707 925 Pfam Regulator of chromosome condensation (RCC1) repeat 309 337 - -
Vvi4g707 925 Pfam Transcription factor BRX N-terminal domain 735 764 IPR027988 -
Vvi4g707 925 Gene3D - 163 341 IPR009091 -
Vvi4g707 925 SUPERFAMILY RCC1/BLIP-II 214 541 IPR009091 -
Vvi4g707 925 Coils Coil 691 711 - -
Vvi4g707 925 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 325 IPR000408 -
Vvi4g707 925 CDD PH_PLC_plant-like 13 125 - -
Vvi4g707 925 SMART fyve_4 539 608 IPR000306 GO:0046872
Vvi4g707 925 PRINTS Chromosome condensation regulator RCC1 signature 257 270 IPR000408 -
Vvi4g707 925 PRINTS Chromosome condensation regulator RCC1 signature 276 292 IPR000408 -
Vvi4g707 925 PRINTS Chromosome condensation regulator RCC1 signature 326 342 IPR000408 -
Vvi4g707 925 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Vvi4g707 925 PRINTS Chromosome condensation regulator RCC1 signature 383 397 IPR000408 -
Vvi4g707 925 PRINTS Chromosome condensation regulator RCC1 signature 485 503 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g707 - - - vvi:100253065 1291.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g707 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011227 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31