Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g711 ATGGATCCGCAACCCGAACCTGTTAGCTACATCTGTGGAGACTGTGGGCAAGAAAACACCCTGAAGCCTGGCGATGTGATTCAATGCCGTGAATGTGGTTACCGCATCTTGTACAAAAAGCGAACCCGTAGAATTGTGCAGTATGAAGCACGCTGA 156 49.36 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR* 52
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10836815 10849302 + Vvi4g711 Vvi4g711 785490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g711 51 SMART rpolcxc3 8 51 IPR006591 GO:0003677|GO:0003899|GO:0006351
Vvi4g711 51 SUPERFAMILY RNA polymerase subunits 7 51 IPR029040 -
Vvi4g711 51 Pfam DNA directed RNA polymerase, 7 kDa subunit 10 41 IPR006591 GO:0003677|GO:0003899|GO:0006351
Vvi4g711 51 PANTHER BNAA06G00770D PROTEIN 1 51 - -
Vvi4g711 51 Gene3D RNA polymerase ii, chain L 1 51 - -
Vvi4g711 51 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III 1 51 IPR039747 GO:0003899|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g711 K03009 RPABC4, RPB12, POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 - oeu:111370869 114.005
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g711 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .