Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g712 ATGACTGTTGAGGATCAAAGTGGAGGTAGTCGTTCAAATACCTTTCTATCAGCTGGTAATCTAATTTCATTGGATGCTGGGACTCATTCTTTAACTGCTGCTGAGCTGAAGGAGCAATTTTCTTGCAGAGATGACCTGGCTCCCAAGGCTAGGAAACCATACACAATTACCAAACAAAGAGAAAGATGGACTGAAGAAGAGCATAAGAAGTTTCTTGAAGCTTTAAAGCTGTATGGTCGGGCTTGGAGGCGTATAGAAGAGCATGTGGGCACCAAGACTGCAGTTCAGATTCGAAGCCATGCCCAGAAGTTTTTCTCTAAGGTGGTTCGGGAAACAAGTGGTGGCAACACAAACTCAGCAGAACCTATTGAGATTCCTCCTCCCAGACCAAAACGAAAACCTGTTCACCCTTATCCCCGTAAACTGGTGCACCCACTTAGAAAAGGAATCTCAGTTCTTGAGCCGCCAGTGAGATCTGTATCACCAAATTTTTCGGCTTCAGAACAAGAAAACCAGTCCCCCACATCAGTATTATCAGCAGTTGGTTCAGAGACACTGGGTTCCACACTTTCAAATACACAGAATGGTAGCCCATCTCCAGTTTCATCTGCGGCTGGTGTCAACCCAGATAGAATGTTTCTCCCTGAACTCAATCCACCAACCGAGGAAAATGCATCTCCATCCCCGGTCTTAACGACATCTAGCTCTGTTCCGGATGAACCTTTACCCATGAAGTTCGAGTTGTTTCCACAGGAAATATTTGCTAAAGAATGTTCGGTCGAGGAAGCATCCACCCGAACTCTTAAGCTATTTGGGAGGACTGTATTAGTGACAGATTCCCACAGGCCATCTTCTCCAACAACCTCTAAGTCTCAGCCTTCAGACATTAATAACGAGGGAATGCATGTTGAAACATTACCATGGAACTCAACACCCACAGAATCTTCTCCCGAGAATTCAAGTTTTTCATGGAGTCATTTGCAACCTCAACCATCAGGGGCTTTCTATTACATGCATTTCCAGAAAGAGGATTCAAATTGTGTAGAAGCTGGTACCACTGCTCCCCTGCCATGGTGGACCTTTTATGGGGGCATACCAATTCCTTTCCTTCCGCTCCATCATCAGGACTCGATCAAAGCACATGAAGACACAAAATTTGCTGAAACTCATGACAAAGAGATTCAGAAGGAAGGATCTTGGACAGGGTCAAATACTGGATCAAGCCACCAACCTTATTTAGACACGATGGAAAAAGAATCAGACTCAGCTTTCGAGTTAAAGTTGAGCGAGAGATCAGCCTTCTCTAGAGGAAGAACAAACACGGACAAGTGTGTGAAGGGGTTTATGCCATATAAAAGATGTTTGGCAGAGAGAGACACCCAGTCATCAATAATAATTGGGAACGAGAGGGAGGAGCAGAGGATCCGCCTTTGCTTGTAG 1440 44.93 MTVEDQSGGSRSNTFLSAGNLISLDAGTHSLTAAELKEQFSCRDDLAPKARKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRETSGGNTNSAEPIEIPPPRPKRKPVHPYPRKLVHPLRKGISVLEPPVRSVSPNFSASEQENQSPTSVLSAVGSETLGSTLSNTQNGSPSPVSSAAGVNPDRMFLPELNPPTEENASPSPVLTTSSSVPDEPLPMKFELFPQEIFAKECSVEEASTRTLKLFGRTVLVTDSHRPSSPTTSKSQPSDINNEGMHVETLPWNSTPTESSPENSSFSWSHLQPQPSGAFYYMHFQKEDSNCVEAGTTAPLPWWTFYGGIPIPFLPLHHQDSIKAHEDTKFAETHDKEIQKEGSWTGSNTGSSHQPYLDTMEKESDSAFELKLSERSAFSRGRTNTDKCVKGFMPYKRCLAERDTQSSIIIGNEREEQRIRLCL* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10884889 10889188 + Vvi4g712 Vvi4g712 785491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g712 479 PANTHER PROTEIN REVEILLE 7-RELATED 6 467 - -
Vvi4g712 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vvi4g712 479 SMART sant 59 107 IPR001005 -
Vvi4g712 479 MobiDBLite consensus disorder prediction 221 239 - -
Vvi4g712 479 MobiDBLite consensus disorder prediction 111 149 - -
Vvi4g712 479 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vvi4g712 479 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Vvi4g712 479 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vvi4g712 479 PANTHER SWI/SNF COMPLEX-RELATED 6 467 - -
Vvi4g712 479 Gene3D - 62 109 - -
Vvi4g712 479 MobiDBLite consensus disorder prediction 186 204 - -
Vvi4g712 479 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Vvi4g712 479 CDD SANT 62 105 IPR001005 -
Vvi4g712 479 MobiDBLite consensus disorder prediction 186 240 - -
Vvi4g712 479 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vvi4g712 479 MobiDBLite consensus disorder prediction 279 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g712 - - - vvi:100263252 912.909
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011957 0 2 0 0 0 1 1 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14780 PF00249 Myb_DNA-binding 3.70E-14 CL0123 Vvi TF