Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g713 ATGCCTGTCCACTATCGGAGGATCAAATGCAGAAAAGAAGGCGGTGTTCGATTTTCACTTGATGGATCAGGTATATTCTTATCAGTGCTGATCAGCAATGTGGGTGGCGCTGGAGACATAGTGGGAGTGAAGGTAAAGGGTTCAAGAACAGGATGGCTTCCAATGGGCAGGAATTGGGGTCAGAACTGGCATCTCAATGCTGATTTAAAGAATCAGCCTCTTTCCTTTGAGATCACTGCTAGCGATGGAATCACCCTCACATCTTACAATGTTGCTCCCAAGGGTTGGAATTTTGGACAGACTTTTGAAGGCAAGCAATTTGAATCTTAA 330 44.85 MPVHYRRIKCRKEGGVRFSLDGSGIFLSVLISNVGGAGDIVGVKVKGSRTGWLPMGRNWGQNWHLNADLKNQPLSFEITASDGITLTSYNVAPKGWNFGQTFEGKQFES* 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10905014 10909860 + Vvi4g713 Vvi4g713 785492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g713 109 PRINTS Expansin/Lol pI family signature 52 66 IPR007118 GO:0005576
Vvi4g713 109 PRINTS Expansin/Lol pI family signature 90 104 IPR007118 GO:0005576
Vvi4g713 109 PANTHER EXPANSIN 1 108 - -
Vvi4g713 109 PRINTS Expansin signature 14 26 IPR002963 GO:0009664
Vvi4g713 109 PRINTS Expansin signature 26 47 IPR002963 GO:0009664
Vvi4g713 109 PRINTS Expansin signature 61 82 IPR002963 GO:0009664
Vvi4g713 109 PRINTS Expansin signature 90 106 IPR002963 GO:0009664
Vvi4g713 109 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 25 104 IPR007117 -
Vvi4g713 109 Gene3D - 16 107 IPR036749 -
Vvi4g713 109 Pfam Expansin C-terminal domain 16 93 IPR007117 -
Vvi4g713 109 SUPERFAMILY PHL pollen allergen 12 104 IPR036749 -
Vvi4g713 109 PANTHER EXPANSIN-A15 1 108 IPR002963 GO:0009664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g713 - - vvi:100249605 231.491