Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g715 ATGGAGTTTCGGACCGGAGGAAATGGCTCCGGTGGTGATCAAGATGGTCCCAATCCTCGAAGAGGGAGGAAAGTGTACAATCGCCACACTCCTCAGCAGATTCAGCGCCTTGAAGCGTTTTTCAAGGACTGCCCCCATCCAGATGAAGCCCAGAGGCGTCAGTTGGGCAGGGAATTGGGGCTTGAGTCCCGCCAGATCAAGTTTTGGTTTCAGAACAAGCGTACTCAAACAAAGACTCAACATGAGCGCGCAGATAACACTGCCCTTCGGGCCGAGAATGAAAGGATCCAATGTGAAAACCTTGCAATCAGAGAGGCACTGAAGAATGTGATCTGCCCATCGTGTGGGGGTCCACCCTTCGGGGAAGAAGAACGGCAGCGTAACATAGAGAAGCTTCAGCTTGAAAACGCCCAATTGAAAGAAGAGCATGAAAAGGTATCAAATCTTCTTGCCAAGTACATAGGGAAACCCATTACACAAATGCATTTGCTGCCACCTGCCCTTGGATCTTCTTTGGATTTTTCACCAGGAAGTTTCCCAAGCCAAGAGACAGGAGGCCTTTCCATCCCCACAGTAGGCCCTGCCCTAGGCCTTGAACTTGCTCCCGTGGATGTTTGCAATGCTTCAGTGATGTATCAATTTAAGGGATTCCCAGATATGGAAAAGACGCTCATGACTGAGACTGCTGCCGGTGCCATGGATGAATTAATCAGGCTTGTGCGTATCAATGAGCCTTTGTGGGTCAAGTCCGCCACTAATGAAAAATATGTTCTTCACCATGACAGCTATGAAAGAATTTTCCCCAAGGCTACTCACTTCAAAAGTTCAAATGCTCGAATTGAATCATCAAAGGAATCAGTCGTGGTGGCCATGAATGGAATGCAGCTGGTCAACATGTTTCTGGATCCAAATAAATATGTCGATCTCTTTCCCACAATCGTTACCAAAGCAAGCACAATTCAAGTTCTTGAGGCTGGAATAATTGGAAGCCGGAGTGGTTCCTTGCAATTGATGTATGAACAGATGCATATTCTTTCACCTCTTGTAGCACCTAGAGAATTCTACTTTCTTCGTTATTGCCAGCAAATTGAGCTAGGCGTGTGGGTGATGGTGGATGTGTCCTATGATTACTCCAAAGATGGCCAACCAAACTCTTTGCGATTTTGGAAACTTCCTTCTGGATGCATGATTCAAGACTTGCCTGATGGCTGCTCCAAGGTTACTTGGGTAGAACATGTTGAAGTGGATGACAAAAGTCTAACGCATCGGCTCTATAGAGATCTTGTCTCCGGTAGCTTAGCCTTCGGGGCAGAAAGAATGGTCGGTACTCTTCAAAGGATGTGCGAGAGGCTCGCTTACTTGGCAGATGAAAATACACCGACTCGTGATCTTGCAGGAGTGATTAGCTTGCCTGAAGGGAGGAGAAGTATAATGAAGCTTGGTCACAGGATGGTGAAAGATTTTTGTGGGGTTTTAAGCATGTCTGGAAAACTAGACTTTCCTCAGTTATCTGAAGTGGACACTAGCGGTGTCAGAGTCTCTGTTCGCAAGAGCACAGAACCCGGCCAACCTGGTGGCCTGATTGTCAGCGCTGCGACCTCCCTTTGGCTCCCCATGCAATGTCAGACTATATTTGATTTCATCAGAGATGAGAAAATGCGACCTCAGTGGGACGTTCTGTCCAGTGGAAATCCAGTGCATGAGATTGCACATATCGCAAATGGAGTTAATCCAGGGAACTGTACAAGTATCATTCGGCCTTTTGTCCCCACCGAGAACAACATGCTCATGCTTCAAGAGAGCTGCGTGGAGCCTCTGGGAGGCTTGGTGGTCTATGCCCCCATTGACATACCGGCCATCAACGTTGCAATAAGGGGAGAGGAGTCTGGAAACATACCCATTCTTCCATCTGGGTTCATAGTCTCTGGAGATGGCCGTTCCGACTCAGGAGCCGGATGTACATCTGACGGGAATATCATGGGGTCGGGCGGTTCCCTTCTTACAGTGGCTTTCCAAGTACTGGTTTGTGGCCCTGCGGCTCCGCAGCAGCAGCTGAACATGGAGTCGGTCGCCACTGTCAATACTCTTATTAGCTCCACCGTTCAAAAAATTAAGATTGCCTTGAATTGTTCTGGTTTGGATTGA 2145 47.97 MEFRTGGNGSGGDQDGPNPRRGRKVYNRHTPQQIQRLEAFFKDCPHPDEAQRRQLGRELGLESRQIKFWFQNKRTQTKTQHERADNTALRAENERIQCENLAIREALKNVICPSCGGPPFGEEERQRNIEKLQLENAQLKEEHEKVSNLLAKYIGKPITQMHLLPPALGSSLDFSPGSFPSQETGGLSIPTVGPALGLELAPVDVCNASVMYQFKGFPDMEKTLMTETAAGAMDELIRLVRINEPLWVKSATNEKYVLHHDSYERIFPKATHFKSSNARIESSKESVVVAMNGMQLVNMFLDPNKYVDLFPTIVTKASTIQVLEAGIIGSRSGSLQLMYEQMHILSPLVAPREFYFLRYCQQIELGVWVMVDVSYDYSKDGQPNSLRFWKLPSGCMIQDLPDGCSKVTWVEHVEVDDKSLTHRLYRDLVSGSLAFGAERMVGTLQRMCERLAYLADENTPTRDLAGVISLPEGRRSIMKLGHRMVKDFCGVLSMSGKLDFPQLSEVDTSGVRVSVRKSTEPGQPGGLIVSAATSLWLPMQCQTIFDFIRDEKMRPQWDVLSSGNPVHEIAHIANGVNPGNCTSIIRPFVPTENNMLMLQESCVEPLGGLVVYAPIDIPAINVAIRGEESGNIPILPSGFIVSGDGRSDSGAGCTSDGNIMGSGGSLLTVAFQVLVCGPAAPQQQLNMESVATVNTLISSTVQKIKIALNCSGLD* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10997909 11025564 + Vvi4g715 Vvi4g715 785494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g715 714 Gene3D - 10 96 - -
Vvi4g715 714 MobiDBLite consensus disorder prediction 1 25 - -
Vvi4g715 714 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Vvi4g715 714 SMART HOX_1 22 84 IPR001356 GO:0003677
Vvi4g715 714 SUPERFAMILY Homeodomain-like 9 80 IPR009057 -
Vvi4g715 714 SUPERFAMILY Bet v1-like 219 452 - -
Vvi4g715 714 CDD homeodomain 20 81 IPR001356 GO:0003677
Vvi4g715 714 SUPERFAMILY Bet v1-like 469 699 - -
Vvi4g715 714 Coils Coil 122 156 - -
Vvi4g715 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 6 711 - -
Vvi4g715 714 CDD START_ArGLABRA2_like 222 449 - -
Vvi4g715 714 Gene3D - 226 443 IPR023393 -
Vvi4g715 714 SMART START_1 227 450 IPR002913 GO:0008289
Vvi4g715 714 Pfam START domain 230 450 IPR002913 GO:0008289
Vvi4g715 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 711 IPR042160 -
Vvi4g715 714 Pfam Homeodomain 24 78 IPR001356 GO:0003677
Vvi4g715 714 ProSiteProfiles START domain profile. 218 453 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g715 K09338 HD-ZIP; homeobox-leucine zipper protein - vvi:100254711 1434.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001874 2 6 3 2 3 2 2 2 1 2 2 2 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 3 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14781 PF01852 START 5.90E-39 CL0209 Vvi TF