Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g717 ATGGCCTTCGACAAGATCAAAGTCGCCAACCCCATCGTTGAGATGGATGGAGATGAAATGACTCGAGTTTTCTGGAAATCAATCAAGGATAAGCTTATTTTTCCATTTCTGGAGTTGGATATAAAGTATTTTGATCTTGGGCTCCCTCATCGTGACGCCACTGATGATAAGGTTACAGTTGAAAGTGCAGAAGCTACACTTAAGTACAATGTAGCAATCAAGTGTGCAACTATTACTCCAGATGAAGGTCGCATGAAGGAATTCGACTTGAAGCAAATGTGGAAGAGTCCAAATGGGACAATTAGGAATATATTGAATGGCACCGTTTTCAGAGAACCAATCATTTGCAAAAACATTCCCAGGCTTGTCCCAAGTTGGACAAAGCCAATATGCATTGGAAGGCATGCTTTTGGTGATCAGTATCGAGCAACTGATACAGTGATTAAAGGAGCTGGGAAACTCAAATTGGTGTTTGTACCAGAAGGAAAAGATGAAAAGACAGAGCTTGAGGTTTTCAACTTTACAGGTGCTGGAGGAGTAGCATTGTCGATGTATAATACTGATGAGTCCATTTATGCTTTTGCTGAGGCTTCAATGAACACTGCTTACCTAAAACAGTGGCCCCTTTATCTTAGCACAAAAAATACTATTCTTAAGAAGTATGATGGGAGATTCAAGGACATATTCCAAGAAGTTTATGAGACCCAATGGAAATCAAAGTATGAGGCTGCTGGGATCTGGTATGAACACCGTCTCATTGATGATATGGTTGCTTATGCTCTCAAGAGTGAAGGAGGTTATGTGTGGGCATGCAAGAACTATGATGGAGATGTACAGAGTGATTTCTTAGCTCAAGGATTCGGATCTCTTGGTTTGATGACATCTGTGCTGGTTTGTCCAGATGGAAAGACCATAGAAGCTGAAGCTGCCCATGGGACAGTGACACGTCATTTCCGGGTTCATCAGAAAGGAGGTGAAACCAGTACAAACAGCATAGCCTCTATCTTTGCTTGGTCACGAGGCCTTGCACACAGGGCAAAGTTGGATGACAATGCTAGACTCTTGGATTTCACTGAGAAACTAGAAGCAGCTTGTGTTGGAACTGTGGAATCTGGAAAGATGACCAAGGATCTTGCACTTCTTATCCATGGATCTAAGGTGACGAGGGATTGGTATCTGAATACTGAAGAGTTCATCGATGCTGTGGCAGCAGAGCTGACAGCAAAACTTTCTTGCTAA 1239 42.45 MAFDKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPHRDATDDKVTVESAEATLKYNVAIKCATITPDEGRMKEFDLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPSWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGKDEKTELEVFNFTGAGGVALSMYNTDESIYAFAEASMNTAYLKQWPLYLSTKNTILKKYDGRFKDIFQEVYETQWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNARLLDFTEKLEAACVGTVESGKMTKDLALLIHGSKVTRDWYLNTEEFIDAVAAELTAKLSC* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11130799 11137368 + Vvi4g717 Vvi4g717 785496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g717 412 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 411 - -
Vvi4g717 412 PIRSF IDH_NADP 1 412 IPR004790 GO:0004450|GO:0006102
Vvi4g717 412 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 411 IPR004790 GO:0004450|GO:0006102
Vvi4g717 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 409 - -
Vvi4g717 412 SMART Iso_dh_2 11 402 IPR024084 -
Vvi4g717 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 411 IPR004790 GO:0004450|GO:0006102
Vvi4g717 412 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Vvi4g717 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Vvi4g717 412 Gene3D Isopropylmalate Dehydrogenase 4 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g717 K00031 IDH1, IDH2, icd; isocitrate dehydrogenase [EC:1.1.1.42] - vvi:100261578 840.876
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g717 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00846 Cam01g0871 Cec01g0869 Cco01g0897 Clacu01g0860 Cmu01g0828 Cre09g1682 . . . . . . . . . . . . Bpe14g00063 . . Bma02g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001183 3 5 3 4 3 2 4 2 2 1 2 2 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 3 5 3 77