Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g72 ATGTTGGTCAGGCAAGGGGAGCCCAACACCCAGTCAGAAGTTGCAGGCACTTACGGATATCTTGCCCCTGAGTATGCTTACGCAACAAAGGTGAACGAGAAGAACGATGTATATGGCTTTGGAGTAGTCCTGCCTGAGCTGGTGACGGGGAGAGAACGCAACGGCGAGCACATGTGCCTTGTAGAATGGGCATGGGGTCAGTTCAGGAAGGTTTTGGAAATTCTTCAACGGTGCAGTCCTCAGCAGGGCCATCGAAGAAAGAAAAAGGACCATGAACTTGAATATCTGCGCTTGTTGCAAAACTTCTTCGCGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTGGACCTCACCGCAAACTTCTTCTCTGGAGATATTCCCGCAGCAATTGGGCAGCTACGGGAGCTGTTCTACTTGTTTCTGGTCGAAAATGAGTTCAACGGCACCTGGCCAACAGAGATTGGTAATTTGGCGAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCATGCCCTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAGAAGCTGAAGTATCTTCTGGAACACTTGGATCTCTCACTCAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACGTTGAAGAATTTGACCAATTTGTATTTATTCAATAATAGATTGTCCGGCCGCATTCCTTTATCCATAGAAGCTCTCAACTTGAAAGAAATTGATCTTTCAAAGAACTATTTGACGGGGCCGATACCAACGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGGCAGGAGAGATACCAACAAATATAAGCCTCATTCCTACACTGGAAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCGGAGCTCAAAAGCTTTGAGGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTGGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCACAAGTTTGCTCACAATTCAGCTTTCCAACAATCGCTTTTCAGGTGAGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATGGCTGATGTTAGCTGGAAATTCATTCTCGGGGACACTTCCAAGTAAATTGGCAAGGTATTTGTCCAGAGTGGAGATCAGTAACAACAAGTTTTCTGGTCCAATTCCTACTGAAATCTCTTCTTGGATGAACATAGCTGTGCTCAATGCCAGCAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTCACCAGTCTTTGGAACATCTCTGTTCTGTTGCTTGATGGGAATCAATTCTCGGGTGAGCTTCCATCGGAGATCATCTCATGGAAGTCGCTCAATGATTTGAATCTCTCAAGAAACAAACTTTCTGGCCCAATTCCCAAGGCATTAGGTTCTTTACCTAACCTTAATTACCTCGACCTGTCGGAAAACCAGTTCTTAGGTCAAATTCCTTCTGAACTTGGTCATTTGAAGCTTACTATCCTCGATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAAAATGGAGCATACCAAGACAGTTTCTTGAACAATCCCAAGCTGTGTGTCCATGTTCCCACTCTGAACCTCCCTAGATGTGGTGCCAAACCCGTTGACCCCAACAAATTGTCAACCAAATATCTCGTTATGTTCCTAATTTTCGCTCTATCTGGTTTCCTAGGTGTTGTTTTCTTTACCCTGTTCATGGTTCGAGACTATCACAGGAAGAATCACAGTCGAGACCATACAACTTGGAAGCTTACTCCATTCCAAAATCTGGATTTCGATGAACAGAACATATTGTCCGGTTTGACAGAAAATAATTTGATCGGACGTGGTGGGTCAGGGGAATTATACCGAATTGCTAATAACCGTTCTGGTGAACTCCTAGCGGTTAAAAGGATTTTTAATAAAAGGAAATTGGATCACAAGCTTCAGAAACAATTCATAGCAGAAGTCGGGATATTGGGCGCCATACGCCATTCCAATATAGTGAAGTTGTTGGTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATCGGAGCTGCAGAAGGCCTACGCCACATGCATGAATACTATTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCTGAGTTCAACGCGAAAATTGCTGATTTTGGATTGGCCAAGATGTTGGTCAAGCGAGGAGAGCCCAACACCATGTCAGGAATTGCAGGCTCTTATGGATATATTGCCCCTGAGTTTGCTTATACAAGAAAGGTGAACGAGAAGATTGATGTATACAGCTTTGGAGTAGTCTTGCTTGAGCTGGTGAGTGGGAGAGAACCCAACAGCGTGAACGAGCACAAGTGCCTCGTAGAATGGGCATGGGATCAGTTCAGAGAAGAGAAAAGCATTGAGGAAGTGGTGGATGAGGAGATCAAGGAACAATGTGACAGAGCACAAGTGACCACTCTCTTCAACCTAGGCGTCAGGTGCACTCAGACATCACCATCAGATAGGCCCACAATGAAGAAGGTTCTGGAAATTCTTCAACGGTGTAGTCAGCACTCAGCAGGGCCATTGAAGAAAGAAAAAGGACCATGA 2718 45.33 MLVRQGEPNTQSEVAGTYGYLAPEYAYATKVNEKNDVYGFGVVLPELVTGRERNGEHMCLVEWAWGQFRKVLEILQRCSPQQGHRRKKKDHELEYLRLLQNFFAGPIPADIDRLSRLRYLDLTANFFSGDIPAAIGQLRELFYLFLVENEFNGTWPTEIGNLANLEQLAMAYNDKFMPSALPKEFGALKKLKYLLEHLDLSLNKLEGTIPGGMLTLKNLTNLYLFNNRLSGRIPLSIEALNLKEIDLSKNYLTGPIPTGFGKLQNLTGLNLFWNQLAGEIPTNISLIPTLETFKVFSNQLSGVLPPAFGLHSELKSFEVSENKLSGELPQHLCARGALLGVVASNNNLSGEVPKSLGNCTSLLTIQLSNNRFSGEIPSGIWTSPDMVWLMLAGNSFSGTLPSKLARYLSRVEISNNKFSGPIPTEISSWMNIAVLNASNNMLSGKIPVEFTSLWNISVLLLDGNQFSGELPSEIISWKSLNDLNLSRNKLSGPIPKALGSLPNLNYLDLSENQFLGQIPSELGHLKLTILDLSSNQLSGMVPIEFQNGAYQDSFLNNPKLCVHVPTLNLPRCGAKPVDPNKLSTKYLVMFLIFALSGFLGVVFFTLFMVRDYHRKNHSRDHTTWKLTPFQNLDFDEQNILSGLTENNLIGRGGSGELYRIANNRSGELLAVKRIFNKRKLDHKLQKQFIAEVGILGAIRHSNIVKLLVHNFVLDWPTRLQIAIGAAEGLRHMHEYYSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKRGEPNTMSGIAGSYGYIAPEFAYTRKVNEKIDVYSFGVVLLELVSGREPNSVNEHKCLVEWAWDQFREEKSIEEVVDEEIKEQCDRAQVTTLFNLGVRCTQTSPSDRPTMKKVLEILQRCSQHSAGPLKKEKGP* 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 794662 810293 + Vvi4g72 Vvi4g72 784851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g72 905 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 69 - -
Vvi4g72 905 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 708 902 - -
Vvi4g72 905 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 92 707 - -
Vvi4g72 905 SUPERFAMILY L domain-like 344 548 - -
Vvi4g72 905 Gene3D Ribonuclease Inhibitor 241 286 IPR032675 -
Vvi4g72 905 Gene3D Ribonuclease Inhibitor 179 240 IPR032675 -
Vvi4g72 905 ProSiteProfiles Leucine-rich repeat profile. 526 547 IPR001611 GO:0005515
Vvi4g72 905 SUPERFAMILY Protein kinase-like (PK-like) 628 889 IPR011009 -
Vvi4g72 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Vvi4g72 905 Gene3D Ribonuclease Inhibitor 297 574 IPR032675 -
Vvi4g72 905 ProSitePatterns Protein kinases ATP-binding region signature. 649 672 IPR017441 GO:0005524
Vvi4g72 905 Pfam Leucine rich repeat 477 514 IPR001611 GO:0005515
Vvi4g72 905 SUPERFAMILY Protein kinase-like (PK-like) 7 54 IPR011009 -
Vvi4g72 905 SMART serkin_6 643 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g72 905 Gene3D Ribonuclease Inhibitor 93 178 IPR032675 -
Vvi4g72 905 Pfam Protein kinase domain 645 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g72 905 Pfam Protein kinase domain 721 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g72 905 Gene3D Transferase(Phosphotransferase) domain 1 707 903 - -
Vvi4g72 905 ProSiteProfiles Protein kinase domain profile. 643 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g72 905 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g72 905 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 92 707 - -
Vvi4g72 905 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 708 902 - -
Vvi4g72 905 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 1 69 - -
Vvi4g72 905 SUPERFAMILY L domain-like 92 377 - -
Vvi4g72 905 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Vvi4g72 905 Gene3D Phosphorylase Kinase; domain 1 641 706 - -
Vvi4g72 905 Pfam Leucine Rich repeat 525 538 IPR001611 GO:0005515
Vvi4g72 905 Gene3D Transferase(Phosphotransferase) domain 1 2 92 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76632 PF00069 Pkinase 3.30E-28 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g72 K00924 - vvi:100256117 1582.0