Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g721 ATGGCTCTGTCGGAGACGGCATCAGAGTCCAATGCCTCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAATAAACGACGAGCTGATGCTGGATGGGAACCCGAGGCTGAACCTGGCTTCATTTGTGACAACATGGATGGAACCAGAGTGCGATAAGCTAATCATGGCCTCCATTAACAAGAACTACGTTGATATGGACGAGTACCCTGTCACCACTGAGCTACAGAATCGCTGCGTAAACATGATAGCACATCTATTTAATGCACCACTTGGAGAGTCGGAGGCAGCAGTTGGTGTGGGAACAGTGGGATCTTCAGAGGCAATAATGCTTGCTGGTTTGGCATTCAAGAGGAAGTGGCAAAACAAGAGGAAAGCTGAGGGCAAACCCCATGACAAGCCTAACATTGTTACTGGAGCTAATGTTCAGGTGTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAATTGAAGGAAGTGAAGCTGACGGATGGCTACTATGTGATGGACCCTGTCAAAGCAGTGGAGATGGTGGACGAGAACACCATCTGTGTTGCTGCTATCCTTGGTTCTACCCTCAATGGAGAATTCGAAGATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCCTTTCTTCACCCAGAGCTGGAGTGGGACTTCCGCTTGCCACTTGTGAAAAGCATTAATGTTAGCGGCCACAAGTACGGGCTTGTGTATGCTGGCATAGGTTGGGTGATTTGGAGGAGTAAAGAGGACTTGCCCGATGAGCTCATCTTTCATATCAACTATCTTGGAGCCGACCAACCTACCTTCACCCTCAACTTCTCCAAAGGTTCTAGTCAAGTTATTGCTCAGTATTATCAACTCATTCGCTTGGGCCATGAGGGATATAGGAACATTATGGAAAACTGTCAAGAAAATGCAAGGGTGCTCAAAGAAGGATTGGAGAAGACAGGGCACTTCAACATTGTGTCTAAAGAGAATGGAGTGCCATTAGTAGCCTTCTCTTTGAAAGACAACAGCTGTCACAATGAGTTCGAGGTGTCAGACATGCTGCGACGCTATGGATGGATCGTGCCAGCTTATACCATGCCGCCGGATGCACAACATGTGACTGTTCTTCGTGTCGTCATAAGAGAAGATTTCTCGCGCACACTTGCTGAGCGTCTGGTCACAGATATCCAAAAAGTCCTATATGAGCTCGATACTCTCCCCGCTAAGATTACAGCCAAGGTCCAACAGAGCAACAAGAAGAGTGAAATTGAGACACAGAGGGAGATCACCGAAGCTTGGAAGAAGTTCGTCAGGGAGAAGAAGAAGACTAATGGCGTTTGTTAG 1467 46.97 MALSETASESNASIHSTFASRYVRVSLPRFKIPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTDGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKHLNDLLTKKNKETGWDTPIHVDAASGGFIAPFLHPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNIMENCQENARVLKEGLEKTGHFNIVSKENGVPLVAFSLKDNSCHNEFEVSDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVTDIQKVLYELDTLPAKITAKVQQSNKKSEIETQREITEAWKKFVREKKKTNGVC* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11271683 11278138 + Vvi4g721 Vvi4g721 785500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g721 488 SUPERFAMILY PLP-dependent transferases 14 443 IPR015424 -
Vvi4g721 488 Gene3D - 66 360 IPR015421 GO:0003824
Vvi4g721 488 CDD DOPA_deC_like 59 439 - -
Vvi4g721 488 Gene3D - 361 448 - -
Vvi4g721 488 PANTHER GLUTAMATE DECARBOXYLASE 1 488 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi4g721 488 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g721 488 PANTHER GLUTAMATE DECARBOXYLASE 1 488 - -
Vvi4g721 488 Gene3D - 1 65 - -
Vvi4g721 488 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g721 K01580 - vvi:100256481 989.178