Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g722 ATGGGTAAGGCACGTGCAATTGGCGTTGGCATGGACAATTCAGCAAACAGCAAATCAGCCCTGAGATGGGCTGTTGATAATCTGATTGATGCTGAAGATTGCCTCATCTTAATCTACGTCCAGTCCCCCAAATCTGAGCATCCCAAGAAGCAGCTTTTTGAAGACACTGGATCTCCTTTAGTTCCTCTGGAGGAATTCAGAGATATTAACCTGTCAAAGCAGTATGGGTTAAACCCAGATCCAGAAGTTCTTGATATACTTGACACAGTTGCAAGGAGCAAAGGGGCTAAGGTGGTGGCAAAGGTCTACTGGGGAGATCCAAGGGAGAAGTTGTGCGATGCTGTGGATGACCTCAAGCTTGATTGTCTAGTTCTTGGGAGCAGAGGTTTAGGTGTTCTCAGAAGGATTCTGCTAGGGAGTGTAAGCAACTATGTGATGGTACATGCCTCATGTCCAGTTACAGTTGTGAAGGGGACGCCAGCTACCAAACCCTAG 495 47.07 MGKARAIGVGMDNSANSKSALRWAVDNLIDAEDCLILIYVQSPKSEHPKKQLFEDTGSPLVPLEEFRDINLSKQYGLNPDPEVLDILDTVARSKGAKVVAKVYWGDPREKLCDAVDDLKLDCLVLGSRGLGVLRRILLGSVSNYVMVHASCPVTVVKGTPATKP* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11299191 11300619 - Vvi4g722 Vvi4g722 785501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g722 164 Pfam Universal stress protein family 5 157 IPR006016 -
Vvi4g722 164 CDD USP_Like 7 156 - -
Vvi4g722 164 Gene3D HUPs 3 164 IPR014729 -
Vvi4g722 164 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 158 - -
Vvi4g722 164 PANTHER OS02G0773200 PROTEIN 1 159 - -
Vvi4g722 164 PRINTS Universal stress protein signature 4 22 IPR006015 -
Vvi4g722 164 PRINTS Universal stress protein signature 117 129 IPR006015 -
Vvi4g722 164 PRINTS Universal stress protein signature 135 157 IPR006015 -
Vvi4g722 164 PANTHER IMP2'P 1 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g722 - - - vvi:100251331 313.923
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g722 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00848 Cam01g0873 Cec01g0873 Cco01g0902 Clacu01g0864 Cmu01g0830 Cre09g1678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014899 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 1 17