Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g726 ATGTCTGTTGCTCTGTTGTGGATTGTTCCCCCCAACAAAGAGGCCTCCAATTCCTTTGGCTTTTTGGAATCAATCCGAGATGGAAACCGGTCTTTAGATTCACCATGGTTCATTCCTAGAGACCAGAATTTGATATTTAATGACAGACCCAAGAAAGGTAGGAGGCAGAGGTGCAATTCTGGCTCATCTGGGGCAGATTTGAGGTATTCATACTTGGTGAACCCAACTGGAGAAATGGCAGTGTCGTCGGAGCAGAAGGTTTATGATGTGGTGCTGAAGCAGGCAGCCCTTGTTAAGAAGCAATTGAGATCTAGTGAAGAACTTGATGTGAAACCTGATATTATTCTTCCTGGGACTCAGAGCTTGTTGAGTGAAGCCTATGATCGATGTGGTGAAGTTTGTGCAGAGTATGCCAAGACATTTTACTTGGGAACAATGCTGATGACACCTGAGAGACGAAGAGCTATCTGGGCAATATATGTGTGGTGTCGGAGAACAGATGAGCTTGTTGATGGGCCTAATGCATCACACATAACCCCAACAGCCTTGGATAGGTGGGAGTCAAGGTTGGAAGATCTTTTTCAGGGCCGCCCTTTTGATATGCTTGATGCTGCTTTATCAGATACAGTTGCCAAGTTTCCTGTTGACATTCAGCCATTCAAAGATATGATTGAAGGTATGAGGATGGACCTTAGAAAGTCAAGATACAGAAATTTCGATGAACTATATCTGTACTGTTACTATGTGGCGGGAACTGTTGGGTTAATGAGCGTTCCAGTTATGGGCATTGCACCTGAATCACAGGCAACCACGGAGAGTGTCTATAAGGCAGCCTTGGCATTAGGGATCGCAAATCAGCTGACTAACATACTCAGGGATGTTGGAGAAGATGCAAGGAGAGGAAGGATTTATTTACCACAGGATGAGCTGGCACAAGCAGGGCTCTCAGATGAGGACATTTTTATGGGAAGGGTAACAGATAAATGGAGAAGCTTCATGAAAGATCAAATTAAGAGAGCAAGGATGTTCTTCGATGAGGCGGAAAAAGGAATTACGGAGCTCAGCTCAGCTAGTAGATGGCCGGTATGGGCATCTTTTCTGTTGTATCGGCAAATACTGGATGAGATTGAAGCTAACGATTACAACAACTTCACTAGGAGAGCTTATGTGAGCAAAGCTAAGAAGATAGTTGCTTTGCCACTAGCCTATGCAAGGTCCCTTGTGAGGCCATCAAGAACAACATCTTTAGTCAAGGCATGA 1260 44.52 MSVALLWIVPPNKEASNSFGFLESIRDGNRSLDSPWFIPRDQNLIFNDRPKKGRRQRCNSGSSGADLRYSYLVNPTGEMAVSSEQKVYDVVLKQAALVKKQLRSSEELDVKPDIILPGTQSLLSEAYDRCGEVCAEYAKTFYLGTMLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFQGRPFDMLDAALSDTVAKFPVDIQPFKDMIEGMRMDLRKSRYRNFDELYLYCYYVAGTVGLMSVPVMGIAPESQATTESVYKAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFMGRVTDKWRSFMKDQIKRARMFFDEAEKGITELSSASRWPVWASFLLYRQILDEIEANDYNNFTRRAYVSKAKKIVALPLAYARSLVRPSRTTSLVKA* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11494434 11499618 + Vvi4g726 Vvi4g726 785505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g726 419 SFLD Isoprenoid Synthase Type I 124 406 - -
Vvi4g726 419 PANTHER BIFUNCTIONAL 15-CIS-PHYTOENE SYNTHASE, CHROMOPLASTIC-RELATED 1 412 - -
Vvi4g726 419 CDD Trans_IPPS_HH 128 395 IPR033904 GO:0004311
Vvi4g726 419 ProSitePatterns Squalene and phytoene synthases signature 1. 245 260 IPR019845 GO:0016765
Vvi4g726 419 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 1 412 - -
Vvi4g726 419 Pfam Squalene/phytoene synthase 137 392 IPR002060 GO:0009058
Vvi4g726 419 Gene3D Farnesyl Diphosphate Synthase 117 400 IPR008949 -
Vvi4g726 419 SFLD Phytoene synthase like 124 406 IPR044843 GO:0004311
Vvi4g726 419 ProSitePatterns Squalene and phytoene synthases signature 2. 281 306 IPR019845 GO:0016765
Vvi4g726 419 SUPERFAMILY Terpenoid synthases 126 408 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g726 K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] - vvi:100246195 827.394
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g726 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006420 3 2 1 1 2 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 3 1 38