Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g728 ATGGGCTCTAGTGGAGTGAACTTTTCAGCATTGAGGATAAAGAAGGGACCAACAAATCAATGTGTTTGCCTGGTTGATGCATTGGGCAACCGTACTATGCGGCCCTGTCTCTCAAGTGTTGTTAAGATTCAGGCAGAGGAATTAACTAAAGAGGATTTTAAAGGGGTAAAGTGGTTGGTAATGAGATATGGGATATATAATTTGGAAGTTATTCATGCTGCAATTCAGATGGCCAAAGAGGAGGGCATATTTGTATCCTTGGATTTGGCCAGTTTTGAGACAAGGATTAGGTTGGTTGATATGATCATTCTTGTCTTGTTCCCCAGTGTTTCTCTTAATGTGGACGCTAATTATTGGTTGAATTTGGATTCCTTTTTATTGACATCTTCTTTTCTGCAGATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACCAACGGAAAATTGTTGTTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCAAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCATGTTCTGCACAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGAAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAACAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGTATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTGATCCCCATCAAATCCAGCCACTGACAAGCATTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGTTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGCTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATTGTGGATCTGCAGCCTCTGCTTTTAAAAGTGAGTTCTTTACAGTAAAGCCACTTCCTGGTGATCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGCTATTATGCCCCTTCAATTGCTGATACTAGTTATCATTCCATTTGTTGGATTTTAATGGTTCGGAACTTTAGAGGAACTCTTCTAGAGTTACTGCAATAA 1431 41.23 MGSSGVNFSALRIKKGPTNQCVCLVDALGNRTMRPCLSSVVKIQAEELTKEDFKGVKWLVMRYGIYNLEVIHAAIQMAKEEGIFVSLDLASFETRIRLVDMIILVLFPSVSLNVDANYWLNLDSFLLTSSFLQIGQGTYSNVYRARDLDQRKIVVLKKVRFDNLEQESVRFMAREIHVLHRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLEGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLYRDIKGSNLLIDNSGILKIADFGLASFFDPHQIQPLTSIVVTLWYRPPELLLGATYYGTVVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADCGSAASAFKSEFFTVKPLPGDPSSLPKYPPSKEFDAKVRDEEARSYYAPSIADTSYHSICWILMVRNFRGTLLELLQ* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11555482 11560214 + Vvi4g728 Vvi4g728 785507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g728 476 Pfam Protein kinase domain 133 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g728 476 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g728 476 Gene3D Transferase(Phosphotransferase) domain 1 211 451 - -
Vvi4g728 476 SUPERFAMILY Protein kinase-like (PK-like) 133 414 IPR011009 -
Vvi4g728 476 SMART serkin_6 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g728 476 CDD STKc_CDK9_like 133 412 - -
Vvi4g728 476 PANTHER CYCLIN-DEPENDENT KINASE 133 444 - -
Vvi4g728 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vvi4g728 476 Gene3D - 1 111 IPR029056 -
Vvi4g728 476 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Vvi4g728 476 Gene3D Phosphorylase Kinase; domain 1 124 210 - -
Vvi4g728 476 PANTHER CELL DIVISION PROTEIN KINASE 133 444 - -
Vvi4g728 476 SUPERFAMILY Ribokinase-like 3 103 IPR029056 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76633 PF00069 Pkinase 7.40E-63 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g728 - - vvi:104879100 898.271