Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g733 ATGGCGACCATCGGCCACAACAATCTCAATGCAAAATTGGTTCTTCTTGGTGACATGGGAGCCGGAAAGTCCAGTCTCGTCTTGCGCTTTGTCAAGGGCCAGTTTCTTGAATTCCAGGAATCTACAATTGGAGCGGCGTTCTTTTCACAGACACTAGCGGTAAATGATGCCACAGTGAAGTTTGAGATATGGGACACAGCTGGGCAGGAGAGGTACCACAGCTTAGCTCCGATGTACTATAGAGGTGCTGCTGCGGCCATAATTGTCTATGACATTACTAGCACAGAGTCATTTGCACGGGCTAAGAAGTGGGTGCAAGAACTTCAGAAACAAGGTAACCCTAACATGGTTATGGCGCTTGCTGGGAACAAAGCTGATTTAGAAGATAAGAGGAAAGTGACTGCTGAAGAGGCACGTGTCTATGCTGAAGAAAATGGCCTTTTCTTCACGGAGACCTCTGCCAAAACAGCCGTAAATGTCAATGATACATTTTATGAAATAGTGGTTTCTCCTGTGGTTTCTCAGCTACCAAATAGAGGTTTAATTCAAATTGCTCAAACCATAAACCAAAAATGA 576 44.79 MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESFARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARVYAEENGLFFTETSAKTAVNVNDTFYEIVVSPVVSQLPNRGLIQIAQTINQK* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11644261 11655319 + Vvi4g733 Vvi4g733 785512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g733 191 PANTHER RAS-RELATED PROTEIN RAB5 1 170 - -
Vvi4g733 191 TIGRFAM small_GTP: small GTP-binding protein domain 11 167 IPR005225 GO:0005525
Vvi4g733 191 PANTHER DRAB5-RELATED 1 170 - -
Vvi4g733 191 SMART ras_sub_4 8 174 - -
Vvi4g733 191 CDD Rab5_related 10 167 - -
Vvi4g733 191 Pfam Ras family 12 168 IPR001806 GO:0003924|GO:0005525
Vvi4g733 191 ProSiteProfiles small GTPase Ras family profile. 5 191 IPR001806 GO:0003924|GO:0005525
Vvi4g733 191 SMART ran_sub_2 16 191 - -
Vvi4g733 191 Gene3D - 4 179 IPR027417 -
Vvi4g733 191 SMART rho_sub_3 13 171 IPR001806 GO:0003924|GO:0005525
Vvi4g733 191 PRINTS Transforming protein P21 ras signature 11 32 - -
Vvi4g733 191 PRINTS Transforming protein P21 ras signature 34 50 - -
Vvi4g733 191 PRINTS Transforming protein P21 ras signature 52 74 - -
Vvi4g733 191 PRINTS Transforming protein P21 ras signature 114 127 - -
Vvi4g733 191 PRINTS Transforming protein P21 ras signature 149 171 - -
Vvi4g733 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 168 IPR027417 -
Vvi4g733 191 ProSiteProfiles small GTPase Rab1 family profile. 6 191 - -
Vvi4g733 191 SMART rab_sub_5 11 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g733 K07889 RAB5C; Ras-related protein Rab-5C - vvi:100258211 329.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002705 6 1 4 5 3 1 2 1 1 1 1 1 2 1 1 2 1 5 3 1 1 2 1 1 1 1 1 2 1 3 57