Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g736 ATGGACAGGCTACCCAAGTCTGCTGCAAATTACACAGCCCTCACTCCTATAAATTTCTTGACGAGAGCAGCAGTGGCTTATGCCAGGAAAACATCTTTGATATACGAAAGCACCCGGTTCACTTGGCAGCAAACTTACGAGCGCTGCTGCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCAGTGCCCATGTGCGGGGCTGTCCTCAACACCATTAACATCAGGCTAGATGCCCACAACATAGCCACCATTCTGGGCCACTCGGAAGCAAAGGTGTTCTTTGTTGATTACCAATACGTGCCCTTGGCACGCGAGGCTCTCCTGCTACTAATGGCTCAACACAAGGAGAAGCTTCTTGTCGCCAATGGGAATCCGGGCTATGCTCCGGTGGAAGTTGAGGATGAGTGGGATCCCATTGCTCTCAATTATACATCTGGTACCACATCGGCTCCAAAAGGAGTAGTGTACAGCCACAGAGGTGCCTACCTCAGCACTCTTAGCCTTCTTCTGGGATGGGAGATGGGAGGCGAGCCTGTTTATATGTGGTCACTTCCCATGTTCCATTGTAATGGGTGGACCTTCACCTGGGGAGTGGCGGCACGAGGTGGGACTAGTGTCTGCATTCGCAATACCACCGCCTACGATATGTATCGCAACATCGCCTTACACAATATACTCACTGGTGGAGCACCCCCACCAGCACCTCTGCTAGAGAAGATTGAAGCTCTGGGCTTCCACGTTGTCCACGCTTATGGCCTGACTGAGGCAACCGGTCCTGCCCTTGTCTGCGAATGGCAGGCGGAGTGGAACCGCCTTCCCCGCGACCATCAGGCCAAACTGAAGGCGCCATGGGGGAAATTGTGCTGCGCGGTAGCAATCAAGGACAGATCGAAGGATGTGATCATATCGGGCGGTGAAAACATTAGCAGCGTAGAAGTGGAAAGTATACTATACAGGCACCCAAGAGTGCTGGAAGCTGCAGTGGTGGCAATGCCCCATCCCAAATGGGGAGAGAGCCCATGCGCATTCATCACCATAAACAAGAATCAAACGGGCCAGAATGATGATGAACAGAGCAGTACCCAACAGTGGCCGGCGCGCTTGTCATGTAACCCAAGAGTCAGTAGGCACTGTAGTAAAGTAAAGAATAGGATGTCTGAGCAAATCTGTGTAAAGACTCGGTGGATCTTTACTAGGCATACCTACCATCTTTACAGGAACGAAGCAAGATTGAACACCTTAATCTGGAAAATACACATCTCCGTGTAA 1335 51.09 MDRLPKSAANYTALTPINFLTRAAVAYARKTSLIYESTRFTWQQTYERCCRLASSLHRLNVAKNDVVSVLAPNIPAMYEMHFAVPMCGAVLNTINIRLDAHNIATILGHSEAKVFFVDYQYVPLAREALLLLMAQHKEKLLVANGNPGYAPVEVEDEWDPIALNYTSGTTSAPKGVVYSHRGAYLSTLSLLLGWEMGGEPVYMWSLPMFHCNGWTFTWGVAARGGTSVCIRNTTAYDMYRNIALHNILTGGAPPPAPLLEKIEALGFHVVHAYGLTEATGPALVCEWQAEWNRLPRDHQAKLKAPWGKLCCAVAIKDRSKDVIISGGENISSVEVESILYRHPRVLEAAVVAMPHPKWGESPCAFITINKNQTGQNDDEQSSTQQWPARLSCNPRVSRHCSKVKNRMSEQICVKTRWIFTRHTYHLYRNEARLNTLIWKIHISV* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11741835 11744258 - Vvi4g736 Vvi4g736 785515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g736 444 Pfam AMP-binding enzyme 22 237 IPR000873 -
Vvi4g736 444 PANTHER BUTYRATE--COA LIGASE AAE11, PEROXISOMAL 313 378 - -
Vvi4g736 444 PANTHER BUTYRATE--COA LIGASE AAE11, PEROXISOMAL 1 247 - -
Vvi4g736 444 PANTHER BUTYRATE--COA LIGASE AAE11, PEROXISOMAL 246 306 - -
Vvi4g736 444 ProSitePatterns Putative AMP-binding domain signature. 163 174 IPR020845 -
Vvi4g736 444 PANTHER ACYL-ACTIVATING ENZYME 246 306 - -
Vvi4g736 444 PANTHER ACYL-ACTIVATING ENZYME 1 247 - -
Vvi4g736 444 PANTHER ACYL-ACTIVATING ENZYME 313 378 - -
Vvi4g736 444 SUPERFAMILY Acetyl-CoA synthetase-like 9 375 - -
Vvi4g736 444 Pfam AMP-binding enzyme C-terminal domain 334 372 IPR025110 -
Vvi4g736 444 Gene3D - 321 414 IPR045851 -
Vvi4g736 444 Gene3D - 3 243 IPR042099 -
Vvi4g736 444 Gene3D - 244 320 IPR042099 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g736 K23618 AAE11_12; acyl-activating enzyme 11/12 [EC:6.2.1.2 6.2.1.-] - vvi:100253077 591.652
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g736 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008607 1 2 1 2 2 1 0 1 1 0 1 1 1 1 1 1 1 2 0 1 1 1 1 2 2 3 1 1 1 1 35