Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g739 CAGTCTGATTATATCCAGAACCTTTCAGCTCCATTTCGTCTGTTGACACTTGATAGTAGGGTTTACAACGTCCTCCTCCAGGCAATGGAGCTCGCCAACGCCCGGAGCGCACTCAAGCGCAAACGAGACGACGCCATTGAACCCTTCGACAACGGCACCGCCGCCACCGCCACCACCGACGCCTCCTCTGTTGACCTCTCTCTCCTGGAGGCCGTAGAGAAGTCACAAACCACTGTGGAAAATTTGTTTGATTGCTTGTGTTGCTTGTTGATGCCGTTGGAGAATAAAGAAAGATTCGTCAGAGCTGAGGGGGTTGAGTTGATGATCATTATTATGAAGCAGAAGAAGTTGGCTTATGGCTCCGCCATAAGAGCACTTGATTTTGCGATGACAAAGTATCCACCCGCATGCGAGCGGTTTGTGGATGTGTTGGGTTTGAAGACTGCATTTGCGGCTTTCATGGGTAAGATTCCTATGAGCAAGAAGAATAAGAAAGAACGCTACCAAGAAGAGTTAGAAGAGCGTATTATATCATTGATTGCATCATTATTTGGTGGAATCTTGAGGGGTTCTAGAAGGGATAGATTGTTGAGTAAGTTTGTGGAAAATGAGTGTGAAAAGATAGACCGTCTTATGGAACTTTACATAAGATATTCGGACAGAGTTAAAGCTGAGACCGAACGGATGAACCAACTTAAACTTGATGATTTAGAGATGGATGAAGATGAAAGATACAACCGACGGCTGGAGGTTGGACTTTACACTCTTCAGTTGATTTCAATCATTCTGGGTCATCTTTGGTCTTCTGAGAATCCCCGGATGCAAGCGAGAATTGAACTACTACTCAACCAGCAAAGAATTACCAAAGAGGACATCAAAGATATACTTCAGGAATATCATGACAACATTGGAGATGTTGATGGACAGGAGGAAAAGGAGCGTGCACAGGCAAAGATCCAAAAGTTCATCTCAGCCTTTTGA 981 44.75 QSDYIQNLSAPFRLLTLDSRVYNVLLQAMELANARSALKRKRDDAIEPFDNGTAATATTDASSVDLSLLEAVEKSQTTVENLFDCLCCLLMPLENKERFVRAEGVELMIIIMKQKKLAYGSAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMGKIPMSKKNKKERYQEELEERIISLIASLFGGILRGSRRDRLLSKFVENECEKIDRLMELYIRYSDRVKAETERMNQLKLDDLEMDEDERYNRRLEVGLYTLQLISIILGHLWSSENPRMQARIELLLNQQRITKEDIKDILQEYHDNIGDVDGQEEKERAQAKIQKFISAF* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11913808 11938251 - Vvi4g739 Vvi4g739 785518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g739 326 Pfam Catenin-beta-like, Arm-motif containing nuclear 76 297 IPR013180 -
Vvi4g739 326 PANTHER BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN 76 326 IPR039678 -
Vvi4g739 326 PANTHER BETA-CATENIN-LIKE PROTEIN 1 76 326 - -
Vvi4g739 326 Gene3D - 20 326 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g739 K12864 CTNNBL1; beta-catenin-like protein 1 - vvi:100241064 482.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g739 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010589 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31