Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g740 ATGGGCGACCGTACAAGCTCTGCTGTGACTAAGCCAATATGGATGAAGCAAGCGGAAGAGGCAAAGATCAAGAGCGAGGCTGAAAAAGCCGCCGCCGCCAAAGCTGCCTTCGAAGCCACATTCAAGGATGCCGCCTCCGCCTCCGCTCCTGCGGTGGCCGACTCCTCCTCTTCTGACAGTGACGACGCTGAAGAAGACGCCGAGAGTCGCCTCGCCAGCAAGCCCATCGGCCCCGTCGACCCCTCCAAATGCACGGCTGCTGGCGCTGGAATTGCGGGCGGGGCCGCCTGTTCGGCTTCGTCGTTCGTCGTCGTGACCAAGGATTCCGATGGCAGAAAGGTTCCCAATGGTGGCGCTCAGATTAGGGTTAGGGTTTCGCCTGGAGTGGGCGTCGGCGGATCGGACCAGGAGGGCATCATCAAGGACCAAGGCGATGGCAGCTACACTGTCACATATGTAGTGTCCAAGAGAGGGAATTATATGGTACACGTTGAGTGTAACGGCAAGCCCATTATGGGTAGTCCCTTTCCAGTTTTCTTCAGTGCAGGTACTGCTAGTGGAGGATTGTTGGGTTTGGCTCCTGCATCTACTTTTCCTAATCTAGTTAACCAGACAATGCCCAATATGCCAAATTATTCAGGGTCTGTTTCGGGGGCATTCCCCGGATTACTTGGAATGATTCCAGGCATTGTTCCTGGTGCTTCAGGAGGAGCAGTTTTACCTGGGATTGGAGCATCCCTTGGTGAAGTTTGTCGAGAGTACCTTAATGGACGTTGTGCCAAAACTGATTGCAAGTTTAATCACCCACCTCACAATTTGCTGATGACTGCATTAGCTGCAACCACCACCATGGGAACCCTCAGTCAAGTTCCGATGGCCCCTTCTGCAGCTGCAATGGCTGCTGCTCAGGCAATTGTTGCTGCCCAAGCCCTTCAAGCTCATGCTGCTCAGGTTCAAGCACAAGCCCAGTCAGCCAAAGACTCAGCTGGCTCTCCAGATAAAGTGGGGAAGGCTGATGCTCTTAAAAAAACACTACAAGTCAGCAATCTCAGCCCCCTTCTAACTGTGGAACAGTTGAAACAGCTTTTTAGTTTCTGTGGCACAGTTGTCGAATGTAGCATCACTGATTCAAAGCATTTTGCATATATAGAATACTCAAAACCCGAAGAAGCAACTGCTGCTTTGGCATTGAACAATATGGATGTTGGAGGTCGCCCATTAAATGTTGAGATGGCAAAGTCACTCCCTCCAAAACCAGCTATATTAAATTCTCCACTGGCTTCACCTTCTCTGCCCATGGTAATGCAGCAAGCAGTTGCCATGCAACAGATGCAATTTCAGCAGGCTCTGCTTATGCAACAAACAATGACTGCACAGCAGGCAGCTAATCGAGCTGCAACCATGAAGTCAGCAACAGAATTAGCATCAGCTAGAGCTGCAGAAATAAGTAAAAAGCTAAAAGCTGATGGATTTGTAGAGGAAGAGAAGGAAGAAAAGGAAGAAAATCGAAAATCTAGGTCGCCATCCATATCTCATGCAAGGTCAAAATCCAGGTCAAAATCACCTCTCCACTACCGGCGACGGCGGAGATCTCGTTCTTTTTCACCTCCATCCCGGTACTCAAGAGAGCACAGATCTAGATCACCATTTAGATCTCATCACTACTCAATTCATGACCATGGAAGCAGGTCATATAGAGACAATAAAGATGGCAGTGATAGATCTAGAAGGCGGGATTTGGATAGATCACATGATCATCATTTATCTAGCTCAAGGAGAAATAGGAGTAGGAGTCGAAGCCCTAGAACTAGAAAATCATATCGAGCTGATTCAGAATCACCAAAACGCCGTGTAGAGAGTTCATCACATAGAACCAGGAAATCATCTCGTCATTATTCTAATGAAAAAATAGATGAAAGACGAGATAAAAAATCAAAGCATCGTGACAGAAGGCGGTCCAGGTCAATATCAGCAGAGGGAAAGCATCATAAAGGAAGTGGCTTCTCCCCACGAAGTTTTGATGACAGCAAATCAAAGCATAGAAAGCGATCCAGGTCAAAATCTGCAGAAGGTAAGCGTGTTTTAAGTGACAAAACAGATGAAGGCAGAGATGAGAAAGGGAAGCATCATGAAAAGAGGCGTTCCAGGTCACGATCAGCAGAAGGTAAGTACTGTAGACTAAATAGGTTATCTCCTAAAAGTTCTGATGAAATCAGACCAAAACATAGAAGACATTCAAGGTCAAGATCTGCAGAATATAGGCGTTCAGATAATAAAGGAGATGAAAAATTAATGCATCACAAGGAACCAAAAGAACGTGAAGTCACTGAGGACTTGAAGGAACCTAGCAAACATAAGATGCCAAAAATAGAGGACATGGAGCTGGCCACAACAGGAGTGGAAGACCAAGGTGGAGGTGAAAAATCAGCTGAGGTGGTTGGCAGAACTGGTTTCAGCGAGGGTCAGGGTTATGTCAATGATGACGGGAAGGATAAATCAGAAAACTTGATGATTGCAGATCCCCCTGCTTTGAATGTTCATATCACCAACACTGTGTCATCTGATGCAGATTTGAGTTATGGGGTCTTCAGGGCAGAAGATGTTAATCGAAACAAAGAAGATGTCAATGAATGGGACATCTATGAGAAGAGCTCTGGTCTTGTTTGA 2667 46.87 MGDRTSSAVTKPIWMKQAEEAKIKSEAEKAAAAKAAFEATFKDAASASAPAVADSSSSDSDDAEEDAESRLASKPIGPVDPSKCTAAGAGIAGGAACSASSFVVVTKDSDGRKVPNGGAQIRVRVSPGVGVGGSDQEGIIKDQGDGSYTVTYVVSKRGNYMVHVECNGKPIMGSPFPVFFSAGTASGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGIVPGASGGAVLPGIGASLGEVCREYLNGRCAKTDCKFNHPPHNLLMTALAATTTMGTLSQVPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQAQSAKDSAGSPDKVGKADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLPMVMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELASARAAEISKKLKADGFVEEEKEEKEENRKSRSPSISHARSKSRSKSPLHYRRRRRSRSFSPPSRYSREHRSRSPFRSHHYSIHDHGSRSYRDNKDGSDRSRRRDLDRSHDHHLSSSRRNRSRSRSPRTRKSYRADSESPKRRVESSSHRTRKSSRHYSNEKIDERRDKKSKHRDRRRSRSISAEGKHHKGSGFSPRSFDDSKSKHRKRSRSKSAEGKRVLSDKTDEGRDEKGKHHEKRRSRSRSAEGKYCRLNRLSPKSSDEIRPKHRRHSRSRSAEYRRSDNKGDEKLMHHKEPKEREVTEDLKEPSKHKMPKIEDMELATTGVEDQGGGEKSAEVVGRTGFSEGQGYVNDDGKDKSENLMIADPPALNVHITNTVSSDADLSYGVFRAEDVNRNKEDVNEWDIYEKSSGLV* 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12078525 12099536 - Vvi4g740 Vvi4g740 785519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g740 888 MobiDBLite consensus disorder prediction 45 79 - -
Vvi4g740 888 MobiDBLite consensus disorder prediction 536 588 - -
Vvi4g740 888 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 407 IPR000504 GO:0003723
Vvi4g740 888 MobiDBLite consensus disorder prediction 689 708 - -
Vvi4g740 888 MobiDBLite consensus disorder prediction 491 508 - -
Vvi4g740 888 CDD RRM_SF 345 410 - -
Vvi4g740 888 MobiDBLite consensus disorder prediction 652 679 - -
Vvi4g740 888 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 414 IPR000504 GO:0003723
Vvi4g740 888 Gene3D - 302 420 IPR012677 -
Vvi4g740 888 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 7 787 - -
Vvi4g740 888 Coils Coil 308 328 - -
Vvi4g740 888 ProSiteProfiles Zinc finger C3H1-type profile. 250 271 IPR000571 GO:0046872
Vvi4g740 888 ProSiteProfiles Filamin/ABP280 repeat profile. 76 180 IPR017868 -
Vvi4g740 888 SMART rrm1_1 344 410 IPR000504 GO:0003723
Vvi4g740 888 Gene3D Immunoglobulins 78 185 IPR013783 -
Vvi4g740 888 SUPERFAMILY RNA-binding domain, RBD 320 420 IPR035979 GO:0003676
Vvi4g740 888 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 7 787 - -
Vvi4g740 888 MobiDBLite consensus disorder prediction 509 535 - -
Vvi4g740 888 SMART flmn_3 80 183 IPR001298 GO:0005515
Vvi4g740 888 MobiDBLite consensus disorder prediction 491 836 - -
Vvi4g740 888 Pfam Filamin/ABP280 repeat 78 176 IPR017868 -
Vvi4g740 888 SUPERFAMILY E set domains 78 178 IPR014756 -
Vvi4g740 888 MobiDBLite consensus disorder prediction 603 644 - -
Vvi4g740 888 Coils Coil 15 36 - -
Vvi4g740 888 MobiDBLite consensus disorder prediction 750 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g740 - - - vvi:100244513 1313.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004005 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 4 1 43