Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g742 ATGAGGACACGTGTTCTTATCTTGGCTGTCTGTTCCTTTTTGTGTTTTTTGAGCCGTTTTTGGCCTTTTTCGCCACCTCAGCACCACTCCACCGACCTCGCCTTCTCCCTGATGCGCCTCTTTCTCGATCCAAAACCCATTCTCTTCAATTTTATCATCTCCTCTCGACTCCTTCCCACTCGCTCCGATCCACTCAACTTGCTCAACTCGCTTCGCTTACCTTCCAGCCATTACTCCACCAATTCCACTTCCAAATCGCCGTCACCCCCTCCCATGGCGGCGATTCCGAAGCCCTCCATTACCACTGTCGACAACGAGGAGGGAATCGCTCGTCGATTCTGGATCAAGTTCCGGAAAGAATCGATTTTCGCTATGTACACTCCGTTCGTGGTCTGTTTGGCTTCCGGGAATCTCAAGCTCGACTCTTTCCGGCATTTTATTGCTCAGGATGTTCACTTTCTCAGGGCCTTCGCTCAGGCATACGAGTTGGCGGAGGAGTGTGCAGATGATGATGATGCAAAGTTAGGGATCTGCCAGCTAAGGAAGAGTGTATTGGAGGAACTGAAAATGCATGATTCATTTGTTAAGGAATGGGGTTTTGACCTGTCCAAAGAGAGCTCTCTTAACTCTGCAACAGTGAAATACAGAGACTTTTTGCTGGCAACAGCTTCTGGGAAAATTGAAGGAGTAAAAGGCCCTGGTAAACTAGCGACGCCTTTCGAGAAAACAAAAGTTGCAGCTTATACTCTAGGTGCCATGACACCTTGCATGAGGCTGTATGCCTTTCTGGGTAAGGAGCTTCAGGCACTTCTACACCCTAGTGAAAGCACTCACCCTTACAAGAAGTGGATTGACAACTATTCTTCTGAAGGTTTCCAGGGTTCAGCTTTACAAACTGAGGACTTGCTGGATAAACTAAGTGTCTCTTTGACAGGCGAAGAGCTTGACATCATAGAAAAGCTTTATTACCAAGCTATGAAACTTGAAATAGAGTTCTTCTGTGCTCAGCTGCTTGATCAGTACACTATAGTTCCTCTAACTAAAGGGCATGACCCTGCAGCAGATCGTCTTGTGATATTTTCTGATTTTGATTTGACATGTACAGTTGTTGACTCTTCTGCCATTTTGGCAGAGATTGCAATAATAACAGCACCAAAATTTGATCAGAATCAACCTGAAAATCAAATTATTCGGATGTCCTCAGCTGACTTGAGGAACACATGGGGTGTTCTATCCAAGCAGTATACTGAAGAGTATGAGCAATGTATAGAAAACATTCTGCCATCTGAGAAAGTGGAGGAATTTGACTATGAAGGCCTGTGTAAAGCACTTGAGCAGCTTTCAGATTTTGAAAAAAGGGCAAACTCTAGAGTGATTGAGTCTGGAGTACTTAAGGGTCTAAATCTTGATGACATAAAACGAGCTGGAGAACGTCTAATTCTTCAAGATGGTTGTGCAAGTTTCTTTCAGAACATTGTAAAGAATGAAAGTTTGATTGCAGATGTCCATATACTTTCATATTGTTGGTGTGGTGATCTTATCAGGTCAGCATTTTCGTCAGGGGGTTTACATGTTCTGAACGTGCATGCAAATGAGTTCGCTTTCAAGGAGTCTATTTCCAATGGTGAAATTGTTAAAAATGTGGAGTCTCCCATTGACAAGCTTAAAGCTTTCCTCAATATCCTAGAGAACTGCAGCAATGACAGAAAGAACTTGACTGTCTATATTGGAGACTCTGTGGGTGACTTACTTTGCCTGCTTAATGCAGATGTAGGCATAGTGATTGGGTCAAGCTCAAGTCTAAAGAGAGTGGGCAGTCAATTTGGAGTTTCGTTTGTTCCATTGTTTCGTTTCTTGGTTAAGAAACAGAAAGAATATGTTGAAGGAAGTTCCTCTCGCTGGAAGGGGCTATCCGGAACTCTTTACACAGTCTCTAGCTGGGCTGAAATACATGCCTTCATTTTGGGGTGGTAG 1974 43.82 MRTRVLILAVCSFLCFLSRFWPFSPPQHHSTDLAFSLMRLFLDPKPILFNFIISSRLLPTRSDPLNLLNSLRLPSSHYSTNSTSKSPSPPPMAAIPKPSITTVDNEEGIARRFWIKFRKESIFAMYTPFVVCLASGNLKLDSFRHFIAQDVHFLRAFAQAYELAEECADDDDAKLGICQLRKSVLEELKMHDSFVKEWGFDLSKESSLNSATVKYRDFLLATASGKIEGVKGPGKLATPFEKTKVAAYTLGAMTPCMRLYAFLGKELQALLHPSESTHPYKKWIDNYSSEGFQGSALQTEDLLDKLSVSLTGEELDIIEKLYYQAMKLEIEFFCAQLLDQYTIVPLTKGHDPAADRLVIFSDFDLTCTVVDSSAILAEIAIITAPKFDQNQPENQIIRMSSADLRNTWGVLSKQYTEEYEQCIENILPSEKVEEFDYEGLCKALEQLSDFEKRANSRVIESGVLKGLNLDDIKRAGERLILQDGCASFFQNIVKNESLIADVHILSYCWCGDLIRSAFSSGGLHVLNVHANEFAFKESISNGEIVKNVESPIDKLKAFLNILENCSNDRKNLTVYIGDSVGDLLCLLNADVGIVIGSSSSLKRVGSQFGVSFVPLFRFLVKKQKEYVEGSSSRWKGLSGTLYTVSSWAEIHAFILGW* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12136528 12197093 + Vvi4g742 Vvi4g742 785521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g742 657 PANTHER AMINOPYRIMIDINE AMINOHYDROLASE, MITOCHONDRIAL ISOFORM X1-RELATED 102 656 - -
Vvi4g742 657 Gene3D - 356 608 IPR023214 -
Vvi4g742 657 SUPERFAMILY HAD-like 350 613 IPR036412 -
Vvi4g742 657 Pfam TENA/THI-4/PQQC family 128 225 IPR004305 -
Vvi4g742 657 Pfam TENA/THI-4/PQQC family 247 337 IPR004305 -
Vvi4g742 657 Gene3D - 109 336 IPR016084 -
Vvi4g742 657 CDD TenA_C_AtTH2-like 109 335 - -
Vvi4g742 657 PANTHER BIFUNCTIONAL TH2 PROTEIN 102 656 - -
Vvi4g742 657 MobiDBLite consensus disorder prediction 78 97 - -
Vvi4g742 657 SUPERFAMILY Heme oxygenase-like 126 333 IPR016084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g742 K22911 TH2; thiamine phosphate phosphatase / amino-HMP aminohydrolase [EC:3.1.3.100 3.5.99.-] - vvi:100266835 1172.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g742 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01101 Cam03g1149 Cec03g1167 Cco03g1155 Clacu03g1120 Cmu03g1707 Cre03g1421 . . . Cme02g00942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004986 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41