Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g749 ATGGATTCCAAACAATCTCTTCAAGGTGCTTTTGTTTCATTCATTGAGAGGCGACGTAGGTCACTCTCTTCAATCCCTTCAGTCATTGTGATTGGTGGCGGTATTTCAGGGATAGCTGCTGCCCATACTCTTCATAATGCATCTTTTCAGGTGGTCTTGTTGGAATCACGGGATAGACTTGGCGGCCGCATTCATACTGATTACTCACTTGGTTGTCCAGTAGATATGGGAGCATCATGGCTTCATGGTGCTTGCAATGAGAATCCCTTGGCTCCATTGATATGTCGTCTGGGCCTTACATTATATCGTACTAGTGGGGATGATTCTGTGTTGTATGACCATGATTTGGAAAGTTGCACACTTTTTGATATGGATGGTCATCAAGTTCCTCAGAAGATGGTTGTTGAAGTTGGAGAGACATTCAAGAAAATTCTGAAAGAGACAGAGAATGTAAGGATTGAACATTGTGATGATATGTCTGTTCTACAAGCAATTTCTATTGTGCTGGATAGGCACCCAGAGTTGAGACAAGAAGGGCTTGCCAATGAAGTGTTGCAATGGTATATTTGTAGAATGGAGGCTTGGTTTGCTGTTGATGCAGATATGATATCACTGAAAAGTTGGGATCAGGAGCATATTCTTTCTGGTGGTCATGGACTTATGGTACAAGGTTACGACCCAATAATAAAGACCCTCTCTAAAGATCTCGATATACGTTTGAATCATAGGGTTACAAATATATCCTATGGGTGTAAAAAGGTGGTGGTCACTGTTGAGGGTGGAAGGAACTTTGTTGCAGATGCTGCCATTATAACTGTTCCCATTGGAATTCTTAAAGCCAATTTAATCGAGTTCAAGCCAAAATTGCCTGATTGGAAGGTTAATGCAATTTCAGATATTGGTGTGGGCAATGAAAATAAGATTGCACTACGATTTGATGATGTTTTTTGGCCAAATGTGGAACTGTTGGGCATTGTTGCTCCCACTTCTTATGCCTGTGGTTATTTTCTCAATCTTCACAAAGCAACAGGTTATCCCATTCTTGTTTATATGACTGCTGGAAGTTCTGCTTGTGGTCTTGAGAAGCTATCTGATGAGTGTGCTGTAAATTTCGTGATGTTGCAGCTCAAGAAAATGTTTCCTGATGCAACTAAGCCCGTTCAGTATCTTGTATCACGGTGGGGAACTGACCCAAACTCGCTTGGTTGTTATGCACATGATGTGGTTGGAAAGCCCGAAGATTCATATGAGAGGCTTCTAGAACCCTTGGACAATCTTTTCTTTGGAGGGGAAGCTGTTAGCTTGGACCACCAGGGATCTGTTCATGGGGCTTACTCAGCTGGAATTATGGCTGCTGAAAACTGTCAAAGGTATATCTTGGAGAGACGGGGAAACTTGGAAAAGCTCCAGCTTGTCTCTCTTAGGAGTGCAATTCATGAGGCTGCAGTCCCCCTCCAGATATCAAGGATGTGA 1473 42.57 MDSKQSLQGAFVSFIERRRRSLSSIPSVIVIGGGISGIAAAHTLHNASFQVVLLESRDRLGGRIHTDYSLGCPVDMGASWLHGACNENPLAPLICRLGLTLYRTSGDDSVLYDHDLESCTLFDMDGHQVPQKMVVEVGETFKKILKETENVRIEHCDDMSVLQAISIVLDRHPELRQEGLANEVLQWYICRMEAWFAVDADMISLKSWDQEHILSGGHGLMVQGYDPIIKTLSKDLDIRLNHRVTNISYGCKKVVVTVEGGRNFVADAAIITVPIGILKANLIEFKPKLPDWKVNAISDIGVGNENKIALRFDDVFWPNVELLGIVAPTSYACGYFLNLHKATGYPILVYMTAGSSACGLEKLSDECAVNFVMLQLKKMFPDATKPVQYLVSRWGTDPNSLGCYAHDVVGKPEDSYERLLEPLDNLFFGGEAVSLDHQGSVHGAYSAGIMAAENCQRYILERRGNLEKLQLVSLRSAIHEAAVPLQISRM* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13197212 13217334 + Vvi4g749 Vvi4g749 785528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g749 490 Gene3D - 107 412 - -
Vvi4g749 490 PANTHER POLYAMINE OXIDASE 4 ISOFORM X1-RELATED 16 490 - -
Vvi4g749 490 SUPERFAMILY FAD/NAD(P)-binding domain 27 458 IPR036188 -
Vvi4g749 490 Gene3D - 28 453 IPR036188 -
Vvi4g749 490 Pfam Flavin containing amine oxidoreductase 35 453 IPR002937 GO:0016491
Vvi4g749 490 PANTHER FLAVIN MONOAMINE OXIDASE 16 490 - -
Vvi4g749 490 PRINTS Flavin-containing amine oxidase signature 27 46 IPR001613 GO:0016491
Vvi4g749 490 PRINTS Flavin-containing amine oxidase signature 201 223 IPR001613 GO:0016491
Vvi4g749 490 PRINTS Flavin-containing amine oxidase signature 386 405 IPR001613 GO:0016491
Vvi4g749 490 PRINTS Flavin-containing amine oxidase signature 437 454 IPR001613 GO:0016491
Vvi4g749 490 SUPERFAMILY FAD-linked reductases, C-terminal domain 301 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g749 K17839 PAO4, PAO3, PAO2; polyamine oxidase [EC:1.5.3.17 1.5.3.-] - vvi:100250153 956.822
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001683 2 3 1 2 1 1 3 2 1 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 5 3 3 67