Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g750 ATGGCAAAAGCGCCATGCTGTACCTGCTACCTTAGCTCAAATGATTGTGGGATGCTCAGAGGTATTCATACAGATCTGACGTCAGTTATACAAATTGCTTCAATATCTTCCCAAGATTCCCACCCCCGTGTGCGTTGGGCAGCTATCGATTTACTTGAGCAACTCTCCAAGTATTTGTGCCCTCAACTGCAAAATCAGCATCATCAACTTGTCATTCCTCTATTAACAAAAGCTTTGCTTGATTTCCAGAATCCCAGAATACAGGCACATGCTGCTTCAGCAATTTCGTGCTTCAGTCAGAGTTGCACCTCAAGCATCTTAAAACCTCACCTCGATGTTATTATGAGTATGTTACTTAAGCTCCTCCAGAAGGGGAGCCAATCATTGAAAGAGGAAGCTTTAACTGCTTTAGCATCATTAGCTAGTTCATCACAGGAGCACTTTCAAGAGTACTATGTTGCTGTTATGCCATACATAAAAGTTATGTCCATGCAAGGCAAGTCTAATCACAGGCTCCTTGCCAAAGCCATGGAGTGCATTACAATGATTTGGATGGCTGTCGGAAAGGAAATTTGTCGTAAGGATTGTCAAGAGGTTGTAGAACTGCTAATCTCATTGCAGGAATCTCAAATGGAGACAGATGATCCAATGAGAATCTGCATATTAGAAGTATGGGGCAGACTTTCCCAATATAAAATTTCTTTAGTGCATGAAGATGTATGTCTATGCAGTCTTAACCTACTGGAGGAGAAAGCCTCAGCTTGTAACATGCTCTGTAGTTGTGCTGCTGAGTTGAAGGAAGACTTTCATTTATGGATTGATGAGGTTGCTGACACTTTAATTCCACTTCTCAAATTTAATCTTCATCAAGAAGTTAGAATGGCTGCTGCTTCAGCCATGCCATTGATATTGGATTCGGCTAAATTAGCTGTGGAGAAAGGGCATATTCTAGAAGTTGATGAATCTCCTGTTATGAAACTGTCTGCCCAAATAATACCAGCTATGACGGCAGCTCTATATATGGCAGAAATTTGTGCAAGATTTTTGGGCTCATTGAATGGATGCATACAGATCTCTGGACCTTACCTGACTGACAATGAGGCTAAGTTCCTCATGGATGAGATAACAAAATTCCTCATAGCTAGATCACTTAGAAGACATGCAAGAGAACAAGGTGTAGCACAAGACTCTGATGCAGGAGAGAGAGAACTGCTTAAAGAGGAAAGTGGGAATGAAAAAGAAGTCTATAACAATGTTGGTGATTGCATGGCCACTTTGATCAAAAGATTCAAGCTATCTATAGTGCCCTTCTTTGAAAAGCTTTTAATATGTGTAGCACGTACCTGGTTTAAATCGTTCTGCACTCCCTTTTCTTACCAATTCTTTTCTGTACAGGTTGATAGAACAACTATAGAGAAAAAATTGGCAGTCCGCATTTTTCATGAAGTTGCTGAGCAATGTGGTGAAGAAGCATTAAAGCAAGAATACTTCCTTCAATCTTATCTGCCCTTCCTATTAGAAGCTTGCAAGAGTGACAAGCCAGAAGTTCAGCAGGTAGCTGCATGGACAATCGGCATTTGTGCAGAGTTTGGTGGATCTTTCTTCAAAACTATTGTTGATGTGGCTCTTTCTAGTCTAAATTCTGTGATAAGCCATCCTAATGCGCTGCAGCCTGATCATGTAATGGTGCATGATGTTGCTGTTTCAGCTCTCGGGAAAATATGCTACTTCCATTATGACAATATCAAGGAAGCTGAGGTGTTGTCTACATGGTTAAGCCATTTACCTATAACAAACTTGTTGAATGAGGCCAAAGTTGCGCACCAGTATCTTTATAGGGTGGTTGAAAGGACAAAAACAGAACCCCTTTCCGTCTATCTTCCTTCAATTATCCGAGTGTTTGCTGAGATTCTATGGGCAGGTAGTAACTTAGCCACTGCACAAACCGTCAGCCAGATGATCGGTCTTTTGAAGAATTCTAAGCAGACATTACCCACTGAATGGGCTTCAATCTGTTCATCCCTGGTTCCCCAGAGAAAGAACTTTTTGCAAGCTATATTGTCTGACACATAG 2073 41.15 MAKAPCCTCYLSSNDCGMLRGIHTDLTSVIQIASISSQDSHPRVRWAAIDLLEQLSKYLCPQLQNQHHQLVIPLLTKALLDFQNPRIQAHAASAISCFSQSCTSSILKPHLDVIMSMLLKLLQKGSQSLKEEALTALASLASSSQEHFQEYYVAVMPYIKVMSMQGKSNHRLLAKAMECITMIWMAVGKEICRKDCQEVVELLISLQESQMETDDPMRICILEVWGRLSQYKISLVHEDVCLCSLNLLEEKASACNMLCSCAAELKEDFHLWIDEVADTLIPLLKFNLHQEVRMAAASAMPLILDSAKLAVEKGHILEVDESPVMKLSAQIIPAMTAALYMAEICARFLGSLNGCIQISGPYLTDNEAKFLMDEITKFLIARSLRRHAREQGVAQDSDAGERELLKEESGNEKEVYNNVGDCMATLIKRFKLSIVPFFEKLLICVARTWFKSFCTPFSYQFFSVQVDRTTIEKKLAVRIFHEVAEQCGEEALKQEYFLQSYLPFLLEACKSDKPEVQQVAAWTIGICAEFGGSFFKTIVDVALSSLNSVISHPNALQPDHVMVHDVAVSALGKICYFHYDNIKEAEVLSTWLSHLPITNLLNEAKVAHQYLYRVVERTKTEPLSVYLPSIIRVFAEILWAGSNLATAQTVSQMIGLLKNSKQTLPTEWASICSSLVPQRKNFLQAILSDT* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13311388 13319110 + Vvi4g750 Vvi4g750 785529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g750 690 Pfam Importin repeat 6 345 445 IPR041389 -
Vvi4g750 690 SUPERFAMILY ARM repeat 472 688 IPR016024 -
Vvi4g750 690 PANTHER IMPORTIN BETA 25 687 IPR040122 GO:0006606
Vvi4g750 690 Gene3D - 16 687 IPR011989 -
Vvi4g750 690 SUPERFAMILY ARM repeat 36 532 IPR016024 -
Vvi4g750 690 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 25 687 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g750 K20222 IPO5, KPNB3, RANBP5; importin-5 - vvi:100245009 1179.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002468 0 3 0 1 1 2 0 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 5 3 3 61