Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g751 ATGATTATAAATAAATTAATTTTAAGGTTCATTTGTTGGAAGAGAGAAGAGAGACCGAAACACGAGAGGAGGCCGTTGCAGCCGCCAGGTCTTGTTGGAATTTATTTTGCATTTGGATTGTTCTTGAGAATTGAATACAGCTCGATATTGAAATCCAAGTTTCTGAGACCAGGAAAAGCCATGGCTGAAGAAGCAGGCATGTTTATGGTACATCAAACCGTTGGCAGTGTTCTTTGTTGCAAATGTGGTATACCAATGACACCGAATGCTGCAAATATGTGTGTCAAGTGTTTGCGCTCTGAAATTGATATTACAGAAGGTTTGCAGAAGCATAATTTGAATAAAGTTAGGTTAATTCATGCAGAATTTATTTGGACTGAGCCTCATTCCAAGAGGATCAAGGTCAAGCTAAGGGTTCAGAAGGAGCAAATGGATCAGGGTATTGATTTCTTCTTTGCTAATCGGAGTCATGGTGTAAAATTTGTGGAGTTTATTGGTAAAGTGACTCCAAGTAGGAGCCGTCATGACAAACAACTTGTGTCCCATGATACCAAGAGCAATAACTACAATTATAAGTACACTTTCTCTGTTGAAATCTGTCCAATATGCCGTGAGGATCTGATCTGCCTCCCTCCAAAAGTTGCTGTTAGTTTGGGAAATCTTGGTCCTCTAGTGATTTGCACAAAAGTGAGCAACAATATTGCTTTACTGGATCCTTTTACTCTTAGGCACTCTGATGCTCAAGTGGCTCGTGTATCAGATTTTGGGAAGAATGATACAATTTTCAACATAAGAACACATCTAGGTCATCTTTTAAACCCTGGGGACCATGCTCTGGGTTATGACGTATATGCAGCTAATAGTAATGATATGGAACTTGAAAAATACAGGGTGGATGATTCCAAGGGTAGAGCTGACCAAGAGAAGATGAATACAGAGTATGAAGTGTTCTTAAGAGATTTGGAGGAGGACCCTGAGTTGAGGTTTAATATATCATTATATCGAAATAAGGAATATCAACCATCAGAGATGGCTTCTATGACCGATGGAGAGGATTTACCTTCTAATATGTGGACTTGTGAGGGCATGTGCACAAGACGGTGGCATTGGCATATGGTACAAGCTACATCAGATTTATTTCAGAGATGGAGACATGGATCCTCAATGTTTCGTGTGGAGATCACTTTCTTGTTTGGAGTTCTGCCACCAGTTTGA 1215 39.92 MIINKLILRFICWKREERPKHERRPLQPPGLVGIYFAFGLFLRIEYSSILKSKFLRPGKAMAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKEQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHSDAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDLPSNMWTCEGMCTRRWHWHMVQATSDLFQRWRHGSSMFRVEITFLFGVLPPV* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13328947 13333387 - Vvi4g751 Vvi4g751 785530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g751 404 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 112 143 - -
Vvi4g751 404 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 299 355 - -
Vvi4g751 404 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 142 245 - -
Vvi4g751 404 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 61 111 - -
Vvi4g751 404 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 245 297 - -
Vvi4g751 404 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 61 111 IPR039768 GO:0043023
Vvi4g751 404 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 299 355 IPR039768 GO:0043023
Vvi4g751 404 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 112 143 IPR039768 GO:0043023
Vvi4g751 404 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 245 297 IPR039768 GO:0043023
Vvi4g751 404 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 142 245 IPR039768 GO:0043023
Vvi4g751 404 Pfam NMD3 family 143 199 IPR007064 -
Vvi4g751 404 Pfam NMD3 family 79 113 IPR007064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g751 K07562 NMD3; 60S ribosomal export protein NMD3 - vvi:100245020 399.438
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002854 1 3 2 2 1 2 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 2 1 1 2 1 3 2 2 52