Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g753 ATGGAGATACAAACATCTGGGAAGCCAATAGATTCGTTGTTAGAGAAGGTTCTGTGTATGAACATTCTCTCATCTGATTACTTTAAAGAGCTTTACCGGCTGAAAACATACCATGAAGTGGTAGATGAGATCTATAATCAAGTTGATCATGTGGAGCCATGGATGACTGGAAACTGTCGGGGCCCATCCACAGCATTTTGCCTTCTTTACAAGTTTTTTACAATGAAGCTCACTGTGAAGCAAATGCATGGACTACTAAAGCACCCAGATTCTCCCTATATTAGAGCTGTAGGATTCCTCTACTTGAGATATGCTGGGGATCCAAAAACTTTGTGGAACTGGTTTGAACCATATGTGAAGGATGAAGAGGAATTCTCTCCTGGATCTACTGGTAGAATGACCACAATGGGTGCATATGTTCGTGATTTACTCCTGGGACAGTACTACTTTGATACCCTTTTCCCACGAATCCCAGTTCCCATAATGCGGCAGATCGTGGCTAATCTTGAAAAAATGAAGCTTCCTAGCAAACATGCTGGTGTCACAGGGGATACCACCCGTCATGGTTCTGATGATACTGCACGTCGGCCACCTTCTGTGAAAGCTGCCCTTTCTGTCTCTTTTGGTCAGCGTGCTCCACATCGTGCTTCAACCAGGGACTCATCTCCTGTTCGTCGCACCTTACCACCACCACCACCTTCTTATGATAGGAATAGCAGTGATGATTTGCGAAGATCTCCCAGCAGCCGTCGCAGCCAAAGCCGTGAGTTAGATAAGGATAGAGACAGGGCTATGGACAGAGACAGAGACAGAGACAAAGACAGGGACAGGGACAGAGACAGAGACAGAGACAGAGACAAAGATAAAGACAGGGACAGAGATAGGGAGCGGGAAAGGGACCGAGACAGGAGGCATGATTATGATCGCAGATCCAAGTATACAGAAAGAGAAAGCAGAAGGGACTATGACAGAAGCTCTCGTGATGGCAATGGGAGCAAAGAGAAGACCTCGGCATCTGCCAATCTGGCGAAGCTCAGAGATCTGTATGGTGACACAGGTGATCAAAAAGGGGGCAGTGCCATGGAAAGAGGCAGTCGTAGGGACAATAGCGGTGAAGAGGTGATTAGACTTGGCGGTTCGTCTTGGAAGTAA 1152 46.88 MEIQTSGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYAGDPKTLWNWFEPYVKDEEEFSPGSTGRMTTMGAYVRDLLLGQYYFDTLFPRIPVPIMRQIVANLEKMKLPSKHAGVTGDTTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPPPPSYDRNSSDDLRRSPSSRRSQSRELDKDRDRAMDRDRDRDKDRDRDRDRDRDRDKDKDRDRDRERERDRDRRHDYDRRSKYTERESRRDYDRSSRDGNGSKEKTSASANLAKLRDLYGDTGDQKGGSAMERGSRRDNSGEEVIRLGGSSWK* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13438817 13455736 - Vvi4g753 Vvi4g753 785532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g753 383 MobiDBLite consensus disorder prediction 238 331 - -
Vvi4g753 383 MobiDBLite consensus disorder prediction 177 383 - -
Vvi4g753 383 PANTHER PRP38 FAMILY PROTEIN 1 383 - -
Vvi4g753 383 Pfam Pre-mRNA-splicing factor 38-associated hydrophilic C-term 187 274 IPR024767 -
Vvi4g753 383 Pfam PRP38 family 8 163 IPR005037 -
Vvi4g753 383 PANTHER UNCHARACTERIZED 1 383 IPR005037 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g753 K12850 PRPF38B; pre-mRNA-splicing factor 38B - qsu:112017494 523.472
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004054 1 4 1 1 1 1 2 1 1 0 1 1 2 1 1 3 1 3 2 1 1 1 1 1 1 1 1 3 4 1 44