Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g759 ATGCCCTTGGAAGGAGTTTTCATTGAACCCTCTTCAAACCCAGTCCCGGATCTTTCTCTTCACATAAGCCCTCCCAACAACACTTCTTCTCCCACATCAATTTGCAATATTAGCAGCAATGAAGGAGGTTCAAACACCAATCTTTTGGGCCAATGCCAAGCTCTTAAATCTGACTCTAACACCTCCGTAAGGAGCAACTTGCAAGCTTACACCGAGCTTTCTTTAGCACACGCAGCAAATGTGATGGATGAAGACGGCCGATGTTCGAGGAATTTCACAGTTGGAGCTGATCAAGAACAACTGCACAACCCATATCATCAAAATCGTCATCATCATCTCAGCCACCACCCTAATAACAATTTAAATCACATAAATCATGGGGTTTCACTGCTCGATGTATCCGATGTTCTGAGGCCAATAAAAGGGATTCCGGTCTATCACAATCGTTCCTTTCCCTTCTTGCCTTTGGACCATTCCAGAGAGAAGGATTCAAGGATGAACTTGTACCAATTGTCATATCCCTCTTGGTCTTCGTCCTTGGCACCATCTTCTTCTTCGGCTGCAGCTAGGCTCAATGGGCTCTCGTCGGATGCGTTCAAATCCCATCAACTACACCATCACCATGTCCCTAGTCACCATGGAGTTGGGCCTTCTGAGGCTTCACATGGGATGATGAGATCAAGATTCATACCCAAGCTCCCTACTAAGAGAAGCATGAGGGCTCCCAGGATGCGCTGGACAAGCACTCTTCACGCTCGATTCGTTCACGCCGTGGAGCTTCTCGGCGGCCATGAAAGGGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTTAAGGATCTCACACTAGCTCATGTCAAAAGTCATTTACAGATGTATCGAACAGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGCCAATCAGATGGGTCTGGTGAAGAAGACATCTCCCCAATGGGCAATGCCAGCGACTGTGGCTTATGCCGATTCACCGATCAAAGAGGAGCCTCGGAGGGGTCTCTGCAACAGGAAATTGACTACCCTTCTACAAATTTGTGGAGTAACTCTTCAAGTAGAGAAGCTTGGTTGCAGCAAAACTCTAGTGAGATGGATGGGCTCAAAACAGCATCTTTTCCGTCACAACAAAGATCGGGACATCAAATAGAGGAATGCAATTCAACTCTACTGAAAGACTACCTAGGGCCTAATCTGGATTGTAAAAACCCGAGCTTGGAGTTCACGCTAGGCAGACCGGATTGGCATGGAAAAGAGCATGACTGA 1284 47.04 MPLEGVFIEPSSNPVPDLSLHISPPNNTSSPTSICNISSNEGGSNTNLLGQCQALKSDSNTSVRSNLQAYTELSLAHAANVMDEDGRCSRNFTVGADQEQLHNPYHQNRHHHLSHHPNNNLNHINHGVSLLDVSDVLRPIKGIPVYHNRSFPFLPLDHSREKDSRMNLYQLSYPSWSSSLAPSSSSAAARLNGLSSDAFKSHQLHHHHVPSHHGVGPSEASHGMMRSRFIPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEEDISPMGNASDCGLCRFTDQRGASEGSLQQEIDYPSTNLWSNSSSREAWLQQNSSEMDGLKTASFPSQQRSGHQIEECNSTLLKDYLGPNLDCKNPSLEFTLGRPDWHGKEHD* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13640929 13649842 - Vvi4g759 Vvi4g759 785538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g759 427 MobiDBLite consensus disorder prediction 297 319 - -
Vvi4g759 427 PANTHER TRANSCRIPTION REPRESSOR KAN1 1 160 - -
Vvi4g759 427 PANTHER TRANSCRIPTION REPRESSOR KAN1 179 427 - -
Vvi4g759 427 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 179 427 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi4g759 427 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 160 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi4g759 427 SUPERFAMILY Homeodomain-like 239 295 IPR009057 -
Vvi4g759 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 295 IPR006447 GO:0003677
Vvi4g759 427 MobiDBLite consensus disorder prediction 368 387 - -
Vvi4g759 427 MobiDBLite consensus disorder prediction 203 222 - -
Vvi4g759 427 MobiDBLite consensus disorder prediction 297 315 - -
Vvi4g759 427 Gene3D - 241 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g759 - - - vvi:100244905 759.985
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01813 . . . Bma02g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14783 None None None None Vvi TF