Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g764 ATGCAAGAAAGAGAGGAGGCAGAGGAGTTGGTGACGCCAGGAGAGGTGTTGGGGAAGGGTTCGCAACTCAAGGCAGGGAGGGGAGCCTACTTCTTACCCCAAAATGGCACCGTTTATGCTTCCCTCACTGGTCGCCGCTCTCTCATCCCTCCTTCTCCCCTTTCATCTGACCAGAGGCCAACTGTCGAAGTAACAGGTCATAGTGCCCATGGTGCCATTCCTGAGCCTGGTTCCATTGTCATTGCCAGGGTTACTAAAGTTATGGCTAGAATGGCCTCAGCTGATATAATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGGCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTCTTTTCGCCCTGGTGACATTGTCAGAGCTCTAGTTCTCTCCCTCGGAGATGCACGGGCATACTTTCTATCAACTGCAAAGAATGAACTGGGAGTTGTATCTGCAGAGAGCGCAGCAGGTGCAACTATGGTTCCAATGAGCTGGACGGAGATGCAGTGCCCATTGACAGGACAAATAGAACAAAGAAAGGTTGCGAAAGTTGGAGGGCAAGCCTAA 603 49.59 MQEREEAEELVTPGEVLGKGSQLKAGRGAYFLPQNGTVYASLTGRRSLIPPSPLSSDQRPTVEVTGHSAHGAIPEPGSIVIARVTKVMARMASADIMCVGPKSVREKFTGIIRQQDVRATEIDKVDMHSSFRPGDIVRALVLSLGDARAYFLSTAKNELGVVSAESAAGATMVPMSWTEMQCPLTGQIEQRKVAKVGGQA* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13993051 14018155 - Vvi4g764 Vvi4g764 785543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g764 200 CDD S1_CSL4 73 162 - -
Vvi4g764 200 Pfam Exosome complex exonuclease RRP4 N-terminal region 10 47 IPR025721 -
Vvi4g764 200 Gene3D - 67 199 IPR012340 -
Vvi4g764 200 PANTHER 3'-5' EXORIBONUCLEASE CSL4-RELATED 1 197 IPR039771 GO:0000178|GO:0006396
Vvi4g764 200 Pfam Exosome component EXOSC1/CSL4 103 144 IPR019495 GO:0000178|GO:0003723
Vvi4g764 200 SUPERFAMILY Nucleic acid-binding proteins 73 193 IPR012340 -
Vvi4g764 200 Gene3D - 8 48 - -
Vvi4g764 200 SUPERFAMILY Ribosomal L27 protein-like 10 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g764 K07573 CSL4, EXOSC1; exosome complex component CSL4 - vvi:100263947 387.111
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g764 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012860 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 0 1 2 1 1 1 1 1 27