Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g767 ATGGCCAGACCTCAGCAGCGATATCGAGGCGTCCAACATAGGCATTGGGGTAGTTGGGTCTCTGAAATTCGCCACCCACTTCTGAAGACTGGAATTTGGTTGGGCACATTCGAAACAGCGGAGGACGCTGCTTGA 135 53.33 MARPQQRYRGVQHRHWGSWVSEIRHPLLKTGIWLGTFETAEDAA* 45
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14185502 14185948 + Vvi4g767 Vvi4g767 785546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g767 44 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE ISOFORM X1 1 44 - -
Vvi4g767 44 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 44 - -
Vvi4g767 44 SUPERFAMILY DNA-binding domain 7 44 IPR016177 GO:0003677
Vvi4g767 44 CDD AP2 6 44 IPR001471 GO:0003700|GO:0006355
Vvi4g767 44 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi4g767 44 PRINTS Ethylene responsive element binding protein signature 30 44 IPR001471 GO:0003700|GO:0006355
Vvi4g767 44 Pfam AP2 domain 7 44 IPR001471 GO:0003700|GO:0006355
Vvi4g767 44 SMART rav1_2 7 44 IPR001471 GO:0003700|GO:0006355
Vvi4g767 44 ProSiteProfiles AP2/ERF domain profile. 7 44 IPR001471 GO:0003700|GO:0006355
Vvi4g767 44 Gene3D AP2/ERF domain 6 44 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g767 - - - pda:103720343 91.6633
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14784 PF00847 AP2 5.20E-05 CL0081 Vvi TF