Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g773 ATGGACAGCTCAGTGGTTTTTTTCAGTTCTTGGATGATTCTAGCTCTATTGCTTGCATTAGGAACAACTGCTCCTCAAGCCCATGCTCGAGCTTTCTTTGTGTTTGGAGATTCGCTTGTTGACAGTGGCAACAATGACTACTTGGTGACGACTGCCCGTGCTGATTCTCCTCCTTATGGTATTGATTATCCAACTCACCGACCCACTGGCCGCTTCTCTAATGGCCTCAACATTCCAGACATTATCAGTGAACAAATCGGGGAACAACCCACATTGCCCTACTTGAGTCCAGAGCTTACAGGAGAAAGACTACTTGTTGGTGCCAACTTTGCTTCTGCTGGAATTGGAATACTTAATGACACTGGAATTCAGTTTCTAAACATAATTCGAATCTACAAACAATTGGAATACTTCCAACAATACCAGCAAAGGGTGACAACTCTCATTGGAGCTGCACAGACTGAACGACTAGTAAACCAAGCGCTCGTCCTCATTACTCTCGGTGGCAACGATTTTGTCAACAACTACTACTTGGTGCCCTTCTCAGCGAGATCTCGCCAATTCTCTCTCCCAGATTACGTTCGCTATCTCATCTCTGAGTACCGAAAAGTCCTAAGGAGGCTATATGAGTTGGGAGCACGAAGGGTCCTGGTGACAGGCACCGGGCCAATGGGCTGTGTTCCAGCAGAATTAGCTATGCGCAGCAGAAACGGGGAATGTGCAGTGGAACTGCAGAGGGCTGCAGATTTGTTCAACCCGCAACTCGTCCAAATGATCAATGGACTCAACAATGAAATTGGTGGAGATGTGTTTATTGCTGCAAATGCATTTAGAATGCACATGGACTTCATCAGTAACCCCGGAGCATATGGGTTTGTTACATCAAAGATAGCATGTTGTGGGCAAGGACCCTACAATGGGCTAGGGCTGTGCACCATTGCTTCCAACTTGTGCGCGAACCGAGACATATACGCGTTTTGGGATGCATTTCATCCATCAGAGAGGGCCAACAGATACATTGTGCGACAGATCCTGAGCGGCTCAACGGACTATATGCACCCCATGAATCTCAGCAACATCATGGCATTGGATTCAAGGACCTAA 1104 46.92 MDSSVVFFSSWMILALLLALGTTAPQAHARAFFVFGDSLVDSGNNDYLVTTARADSPPYGIDYPTHRPTGRFSNGLNIPDIISEQIGEQPTLPYLSPELTGERLLVGANFASAGIGILNDTGIQFLNIIRIYKQLEYFQQYQQRVTTLIGAAQTERLVNQALVLITLGGNDFVNNYYLVPFSARSRQFSLPDYVRYLISEYRKVLRRLYELGARRVLVTGTGPMGCVPAELAMRSRNGECAVELQRAADLFNPQLVQMINGLNNEIGGDVFIAANAFRMHMDFISNPGAYGFVTSKIACCGQGPYNGLGLCTIASNLCANRDIYAFWDAFHPSERANRYIVRQILSGSTDYMHPMNLSNIMALDSRT* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14427680 14430561 + Vvi4g773 Vvi4g773 785552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g773 367 CDD SGNH_plant_lipase_like 31 348 IPR035669 -
Vvi4g773 367 Gene3D SGNH hydrolase 21 349 IPR036514 -
Vvi4g773 367 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 9 364 - -
Vvi4g773 367 Pfam GDSL-like Lipase/Acylhydrolase 33 342 IPR001087 GO:0016788
Vvi4g773 367 SUPERFAMILY SGNH hydrolase 34 345 - -
Vvi4g773 367 PANTHER GDSL ESTERASE/LIPASE LTL1 9 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g773 - - - vvi:100243401 730.709
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g773 . . . . . . . . . . . . . . . Cpe07g00820 . . . . . . . . . . . . . . . . . Cone10ag0627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001042 5 2 4 6 6 2 2 2 2 2 2 2 2 2 2 2 2 7 2 2 2 2 2 2 2 2 2 4 2 4 82