Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g776 ATGGGATTTGGAAAGGCTACATCGAGCTCAAAGGCCATGAAAATCATTGACACTGAAAAGAAGATCTCTGTTCTCATTGTAGAGGATGATCCTCTTATTCAAAAAATCCATAAAGTGATGATGGCTAAATTTGGAACTGAAGTCCAGGTTGTGGCAAATGGTAAAGAAGTCGTTGACCTATACCGCTCAGGCGCATCTTTTGATCTCATCCTTATGGATTTCGAAATGCCTATTATGGATGGATTTGAAGCAACCAAGGAGCTCCGCTCAATGGGTGTTACGAGCATGATTGTAGGAGTGACATCTCGTAGCCAAGACTCAGAGATACAAGCTTTCATGAAGTCTGGTCTAAATGCTTGCTATGTGAAGCCCCTCAATGCCGAAAAGGTCACTGCTGTGCTCAATGAGCTTAAGAACAACTGA 423 42.55 MGFGKATSSSKAMKIIDTEKKISVLIVEDDPLIQKIHKVMMAKFGTEVQVVANGKEVVDLYRSGASFDLILMDFEMPIMDGFEATKELRSMGVTSMIVGVTSRSQDSEIQAFMKSGLNACYVKPLNAEKVTAVLNELKNN* 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14598140 14599841 + Vvi4g776 Vvi4g776 785555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g776 140 SUPERFAMILY CheY-like 20 138 IPR011006 -
Vvi4g776 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 139 - -
Vvi4g776 140 Gene3D - 7 140 - -
Vvi4g776 140 SMART REC_2 22 134 IPR001789 GO:0000160
Vvi4g776 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 8 139 - -
Vvi4g776 140 Pfam Response regulator receiver domain 24 134 IPR001789 GO:0000160
Vvi4g776 140 CDD REC_hyHK_CKI1_RcsC-like 24 134 - -
Vvi4g776 140 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g776 - - - vvi:100255209 270.396
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013177 1 2 1 0 1 1 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 1 2 1 1 0 1 0 2 2 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14785 PF00072 Response_reg 2.80E-22 CL0304 Vvi TR