Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g777 ATGTCGAGCCTCTTAACATACGCGCACCTCCCCTTCAAATCCCCTTATCCTACGAATCCTCGCCGGACACTGACCCTAACTTCGGCAATCTCTTCGCCGGAAAAGAGACCACGGCGGAAGAAAAAAACAAAGCAGCCTAAGGAAGACAGCTTCGTCGCCGTCACGGCGGTGTCGGCCGGCGAGAAGGCTCTGAGACTGACGTTCATGGAGGAGCTAATGGAGCGCGCCCGGAGCGCAGATACCGCCGGAGTTTCCGAAGTGTTCTACGACATGGTTGCCGCCGGGCTCAGCCCTGGCCCTCGCTCGTTCCACGGCTTGATCGTGTCTACCGTTCTCAATGGAGACGATGAGGGCGCGATGCAATCATTGAGGAGAGAGTTAAGTGCAGGCCTTCGGCCTCTCCATGAAACATTTGTGGCATTGATTCGGTTGTTTGGTTCCAAAGGGTATGCTACCAGAGGCTTAGAAATCCTGGCAGCTATGGAAAAATTGAACTTTGACATCCGCAAAGCTTGGCTAGTTCTTGTTGAGGAGCTTGTTAGGCATAATCATCTAGAAGATGCCAACAAGGTGTTCCTGAAGGGTGCCAAAGGTGGGCTGAGAGCTACAAATGAGCTATATGATCTTTTAATCGAGGAAGACTGTAAAGTCGGGGACCATTCTAATGCCCTAACCATTGCCTACGAAATGGAGGCAGCTGGGCGTATGGCAACCACTTATCATTTCAATTGTCTCCTTAGTGTGCAGGCAACTTGTGGAATACCTGAAATAGCTTTTGCAACATTTGAGAATATGGAATATGGAGAAGATTACATGAAACCTGATACAGAGACATATAATTGGGTGATCCAAGCATATACCAGGGCTGAATCCTATGATAGGGTGCAAGATGTTGCTGAGTTACTTGGTATGATGGTCGAAGACCACAAACGCTTACAACCTAATGTGAAGACCTATGCGCTGCTGGTGGAGTGCTTGACCAAGTATTGTGTAGTACGAGAAGCTATACGACATTTCCGTGCCCTTAAAAACTTTGAAGGGGGAACTAAAGTTTTGCATGATGAAGGGAACTTTGGGGATCCACTTTCTTTGTATCTTCGGGCTTTATGTAGGGAAGGAAGGATTGTTGAGTTACTAGATGCTTTAGAAGCCATGGCCAAAGATAACCAACCAATTCCACCAAGAGCCATGATTTTGAGTAGAAAATACCGTACATTAGTTAGCTCATGGATTGAACCTTTACAAGAAGAAGCTGAACTTGGATATGAGATTGATTACATAGCAAGGTACATTGCAGAGGGAGGGCTTACAGGTGATCGCAAGCGATGGGTTCCACGAAGAGGAAAAACTCCTCTTGATCCTGATGCCCTTGGATTTATTTATTCAAACCCAATGGAAACTTCCTTCAAACAAAGATGTCTCGAGGATTGGAAGATGTACCATCGAAAGCTTTTGAAAACATTAAGGAATGAAGGACTTGCAGCCTTAGGGGAAGTATCAGAGTCAGATTATATCAGAGTAGAGGAGAGACTGAGGAAAATAATAAAGGGTCCTGACCAAAATGCTTTAAAGCCCAAGGCAGCTAGTAAAATGATAGTATCTGAACTGAAGGAAGAATTGGAAGCACAAGGTTTGCCAACTGATGGAACTAGAAATGTGCTCTACCAGCGGGTGCAAAAGGCCAGGAGAATAAATCGATCACGTGGTCGTCCCCTTTGGGTTCCTCCTGTGGAGGAGGAGGAAGAAGAGGTTGACGAAGAACTAGACGAATTAATTTCACGGATAAAGCTGCAAGAAGGTAATACAGAGTTCTGGAAGCGTCGCTTCCTTGGAGAGGACTTGACTGTTGGTCGTGGAAAGCCTATGGACAAGGAGAATTCAGAACTTCCAGATGTTCTGGATGATGCTGATATTGGAGAGGATACTGCAAAAGAGGTTGAAGATGATGAAGCTGATGAAGAGGAAGAGGAAGTGGAGCCAACTGAAAGCCAAGTAGCAGACAGAGTCAAGGACAAGGAAGTTGAAGCTGCGAAGCCTCTTCAAATGATTGGAGTCCAACTATTAAAAGATTCTGATCAAACTACTCCTGCAACGAGAAAATCAAGGAGAAAGTTGTCTCGCGCATCAATGGAGGACTCTGATGATGATGACTGGTTTCCTCTAGACATACATGAGGCGTTTAAAGAGATGAGAGAGAGAAAAATTTTTGATGTATCAGACATGTACACAATTGCTGATGTTTGGGGTTGGACTTGGGAAAAAGAACTGAAGAACAAACCTCCTCGTAGTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGGTAATAGAATTGGGTGGGACACCAACTATTGGAGACTGTGCTATGATACTGCGAGCAGCTATAAGGGCTCCTCTCCCTTCAGCCTTCTTAAAAGTCTTGCAGACAACGCACAAACTCGGTTACGTCTTTGGGAGTCCCCTTTACAATGAAGTCATCATTCTATGTCTGGATCTTGGGGAACTGGACGCAGCCATAGCCATAGTTGCAGACATGGAGACTTCTGGAATTGCAGTCCCGGACGAAACCCTGGACAGGGTGATATCTGCTAGGCAGATGATTGATACTGCTGCCACTGATGACACATCATCACAGCAATAA 2655 45.8 MSSLLTYAHLPFKSPYPTNPRRTLTLTSAISSPEKRPRRKKKTKQPKEDSFVAVTAVSAGEKALRLTFMEELMERARSADTAGVSEVFYDMVAAGLSPGPRSFHGLIVSTVLNGDDEGAMQSLRRELSAGLRPLHETFVALIRLFGSKGYATRGLEILAAMEKLNFDIRKAWLVLVEELVRHNHLEDANKVFLKGAKGGLRATNELYDLLIEEDCKVGDHSNALTIAYEMEAAGRMATTYHFNCLLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECLTKYCVVREAIRHFRALKNFEGGTKVLHDEGNFGDPLSLYLRALCREGRIVELLDALEAMAKDNQPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIAEGGLTGDRKRWVPRRGKTPLDPDALGFIYSNPMETSFKQRCLEDWKMYHRKLLKTLRNEGLAALGEVSESDYIRVEERLRKIIKGPDQNALKPKAASKMIVSELKEELEAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKLQEGNTEFWKRRFLGEDLTVGRGKPMDKENSELPDVLDDADIGEDTAKEVEDDEADEEEEEVEPTESQVADRVKDKEVEAAKPLQMIGVQLLKDSDQTTPATRKSRRKLSRASMEDSDDDDWFPLDIHEAFKEMRERKIFDVSDMYTIADVWGWTWEKELKNKPPRSWTQEWEVELAIKVMLKVIELGGTPTIGDCAMILRAAIRAPLPSAFLKVLQTTHKLGYVFGSPLYNEVIILCLDLGELDAAIAIVADMETSGIAVPDETLDRVISARQMIDTAATDDTSSQQ* 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14621964 14683043 + Vvi4g777 Vvi4g777 785556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g777 884 MobiDBLite consensus disorder prediction 632 661 - -
Vvi4g777 884 Gene3D Tetratricopeptide repeat domain 174 444 IPR011990 GO:0005515
Vvi4g777 884 Gene3D Tetratricopeptide repeat domain 721 881 IPR011990 GO:0005515
Vvi4g777 884 SMART sap_9 528 562 IPR003034 -
Vvi4g777 884 ProSiteProfiles SAP motif profile. 528 562 IPR003034 -
Vvi4g777 884 PANTHER - 21 805 - -
Vvi4g777 884 SUPERFAMILY SAP domain 528 564 IPR036361 -
Vvi4g777 884 Coils Coil 581 601 - -
Vvi4g777 884 MobiDBLite consensus disorder prediction 685 714 - -
Vvi4g777 884 Gene3D Tetratricopeptide repeat domain 38 169 IPR011990 GO:0005515
Vvi4g777 884 MobiDBLite consensus disorder prediction 29 49 - -
Vvi4g777 884 Pfam SAP domain 529 561 IPR003034 -
Vvi4g777 884 MobiDBLite consensus disorder prediction 616 631 - -
Vvi4g777 884 MobiDBLite consensus disorder prediction 695 714 - -
Vvi4g777 884 Gene3D SAP domain 516 571 IPR036361 -
Vvi4g777 884 MobiDBLite consensus disorder prediction 616 670 - -
Vvi4g777 884 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE 3 21 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g777 - - - vvi:100241547 1680.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01092 Cam03g1138 Cec03g1154 Cco03g1135 Clacu03g1115 Cmu03g1694 Cre03g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009862 1 1 1 1 1 2 1 2 1 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 33