Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g78 ATGGGATTGAAAGAAAACCTTTTGAGAGGCATTTATGCATATGGTACTGCACTACCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCTCAGGGATCCTGCAGCAGTTGAATGAGGAATTAACCCAGTGTCAGGCTTTGGTCCTTGCTCCTACTAGAGAGCTTGCCCAGCAAATTGAGAAGGTCATGAGAGCCCTTGGTGATCACTTGAATGTTAAGGTTCATTCTTGTGTTGGTGGGACTGTGGTCAGGGAGGATCAGAGAATCCTCTCTGCTGGTGTCCATGCCGGTACTCCCGGGTGCTTTTGA 372 48.39 MGLKENLLRGIYAYGTALPSAIQQKGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHLNVKVHSCVGGTVVREDQRILSAGVHAGTPGCF* 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 855694 856257 - Vvi4g78 Vvi4g78 784857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g78 123 PANTHER RNA HELICASE 1 121 - -
Vvi4g78 123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 123 IPR014001 -
Vvi4g78 123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 121 IPR027417 -
Vvi4g78 123 Gene3D - 1 123 IPR027417 -
Vvi4g78 123 PANTHER EUKARYOTIC INITIATION FACTOR 4A-8-LIKE 1 121 - -
Vvi4g78 123 Pfam DEAD/DEAH box helicase 21 120 IPR011545 GO:0003676|GO:0005524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g78 K03257 - oeu:111367706 212.616