Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g780 ATGCCTGAACTTCCAGAGGTAGAGGCCGCGAGAAGAGCCGTCGAAGAGCACTGCGTGGGCAAGAAGATTACGAAAGCTGTGATCGCTAATGACTCAAAGGTCATCGATGGAGTCTCTCCTTCAGATTTTGAAGCCTCTCTTCTCGGTAAAACCATTGTCTCTGCCCACAGAAAGGGTAAAAACATGTGGCTCCAGCTCGATTCCCCTCCTTTTCCTTCCTTCCAGTTCGGAATGGCGGGTGCTGTATGTATAAAGGGTGTTGCAGTCACAAAATATAAGAGGTCTGCTGTCAAGGATACTGATGAGTGGCCATCCAAATATTCGAAGTTATTTATTGAAGAATGGCGGGTGCTGTAG 357 47.62 MPELPEVEAARRAVEEHCVGKKITKAVIANDSKVIDGVSPSDFEASLLGKTIVSAHRKGKNMWLQLDSPPFPSFQFGMAGAVCIKGVAVTKYKRSAVKDTDEWPSKYSKLFIEEWRVL* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14713069 14730236 + Vvi4g780 Vvi4g780 785559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g780 118 PANTHER OS06G0643600 PROTEIN 1 113 - -
Vvi4g780 118 CDD PF_Nei_N 1 113 - -
Vvi4g780 118 SMART Fapy_DNA_glyco_2 2 111 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Vvi4g780 118 Pfam Formamidopyrimidine-DNA glycosylase N-terminal domain 1 112 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Vvi4g780 118 Gene3D - 1 114 IPR035937 -
Vvi4g780 118 ProSiteProfiles Formamidopyrimidine-DNA glycosylase catalytic domain profile. 2 118 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Vvi4g780 118 PANTHER FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1 113 - -
Vvi4g780 118 SUPERFAMILY N-terminal domain of MutM-like DNA repair proteins 2 107 IPR035937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g780 K10563 mutM, fpg; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] - vvi:100258664 214.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g780 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .