Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g784 ATGTTCAACCGTGCAAGGCCCATCTTCCATCTGCTGATACGAAATTCCCCCGCTTCTCCAATCCTCACACACCTCAAAACCCTAACCACGATCACCACCCACCTCCAAAACACTATCACATCAAAGAAAGATGACTATTTTGCAGTTGTCCACCACATTTCCGCCATTGTTCGCCGCGACTTCTACCTTGAACGAACACTCAACAAGCTCCCCATCTCTGTCACCTCTGATCTTGTTTACCGAGTCCTCCGGAGCTGCCCGAACTCTGGCACGGAGTCCCTCCGCTTCTTCAACTGGGCTCGCTCCCACCTTTCCTACCAGCCCACCACCCTCGAGTATGAAGAGCTCCTCAAAACCCTAGCCCGCACCAAGCAATTCCAACCCATGTGGAAAATCGCCCACCAAATGCAGACTCTCTCGCCTACAGTTGTCTCTTCCATCATTGAAGAGTTTGGAAAACATGGCCTCGTCGATCAGGCAGTAGAGGTCTTCAACAAGGCGAAAAGTGCTTTAAATTGCCCCCAAACAATTGAGGTATACAATTCTCTATTGTTTGCCCTTTGTGAAGTCAAATATTTCCACGGTGCATATGCGTTGATTAGGAGGATGATTAGGAAGGGGGTGACTCCGAATAAGCAGACTTATTCCGTGCTAGTGAATGGGTGGTGTGCAGCAGGGAAGATGAAGGAGGCACAGGATTTCTTGGAGGAGATGAGTAGGAAGGGGTTCAATCCACCAGTGCGAGGCCGGGACCTTTTGGTTGATGGGTTGTTGAATGCTGGATATTTGGAAGCTGCAAAGGAGATGGTGAGGAAGATGACTAAGGAGGGGTGTGCGCCAGATGTAGAGACCTTGAATTCAATGTTGGAGGCAATTTGTAAAGCAGGGGAGGCTGAGTTCTGCATTGACATTTATAATGATGTGTGTAGATTAGGAGTTTCTCCCAATGTGGGTACATATAAGATTATGATTCCTGCAGCTTGCAAAGAGGGTAGAATTGATGAGGCCTTTAGGATTTTGCATCGTTCTATTGAGGATGGACATAGGCCATTCCCCAGTTTGTATGCACCAATTATTAAGGCACTTTGTAGGAACGGTCAGTTTGATGATGCATTTTGTTTTTTCAGTGATATGAAGGTTAAGGGGCATCCACCCAACCGGCCAGTTTACACTATGTTGATAACAATGTGTGGGCGGGGAGGTAGGTTTGTGGACGCTGCCAATTATTTGGTGGAGATGACTGAATTGAATTTGACACCAATTTCCCGGTGCTTTGATATGGTCACTGATGGATTGAAGAATTGTGGGAAGCACGACCTGGCTAGGAAGATAGAACAATTAGAAGTGTCTCTTCGGGGTGTATGA 1365 47.18 MFNRARPIFHLLIRNSPASPILTHLKTLTTITTHLQNTITSKKDDYFAVVHHISAIVRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQTLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMVTDGLKNCGKHDLARKIEQLEVSLRGV* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14964960 14966325 - Vvi4g784 Vvi4g784 785563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g784 454 Pfam PPR repeat 253 278 IPR002885 -
Vvi4g784 454 Pfam PPR repeat 145 168 IPR002885 -
Vvi4g784 454 Pfam PPR repeat family 178 223 IPR002885 -
Vvi4g784 454 Pfam PPR repeat family 357 397 IPR002885 -
Vvi4g784 454 Pfam PPR repeat family 280 329 IPR002885 -
Vvi4g784 454 SUPERFAMILY TPR-like 154 408 IPR011990 GO:0005515
Vvi4g784 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vvi4g784 454 Gene3D Tetratricopeptide repeat domain 85 250 IPR011990 GO:0005515
Vvi4g784 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vvi4g784 454 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 454 - -
Vvi4g784 454 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 19 454 - -
Vvi4g784 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vvi4g784 454 Gene3D Tetratricopeptide repeat domain 254 451 IPR011990 GO:0005515
Vvi4g784 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 179 211 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 253 282 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 355 386 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 319 350 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 389 420 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 214 245 IPR002885 -
Vvi4g784 454 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Vvi4g784 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vvi4g784 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g784 - - - vvi:100260382 900.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007860 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35