Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g79 ATGGCTGGCTTGGCACCGGAAGGATCACAATTTGATGCTCGTCAATATGATAGCAAAATGAATGAGTTACTTGGGACTGATGGACAAGATTTCTTCACATCATATGATGAGGTCTATGAAAGTTTTGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAAGGGGCTTGATGTAATTCAGCAAGCACAGTCTGGAACTGGAAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAGCTTGATTATGGCTTAGTTGAATGCCAGGCATTGGTCCTTGCACCCACTCGGGAACTTGCCCAACAAATTGAAAAGGTTATGCGAGCACTAGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTCCGTGAAGACCAGCGCATTCTCTCAAGTGGGGTTCATGTCGTTGTGGGTACTCCTGGTAGGGTTTTTGACATGTTGCGCAGGCAATCACTTCGTCCTGATTACATTAAGATGTTTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCCACGATGCCACCTGAGGCCCTTGAGATCACAAGGAAATTCATGAATAAACCTGTGAGGATTCTGGTGAAACGTGATGAGCTCACCCTTGAGGGTATCAAACAGTTCTATGTCAATGTTGATAAAGAGGAATGGAAGCTTGAGACACTTTGTGATCTCTATGAGACGCTGGCGATCACCCAGAGCGTCATCTTTGTGAACACCCGGCGCAAGGTTGACTGGCTGACGGACAAGATGCGCAGCCGTGACCACACAGTCTCTGCCACCCACGGAGACATGGATCAAAACACAAGAGACATCATCATGCGTGAATTCCGATCTGGTTCCTCTCGTGTGCTCATCACTACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAAGTCTCTCTTGTGATAAACTATGACCTCCCAACACAGCCAGAAAACTACCTCCATCGAATTGGGCGTAGTGGACGATTTGGGAGGAAGGGGGTGGCAATCAACTTTGTGACCAAGGATGATGAGAGGATGCTTTTTGATATCCAAAGGTTTTATAATGTGGTGGTTGAGGAGCTGCCATCAAATGTTGCTGATCTCCTGTGA 1242 46.22 MAGLAPEGSQFDARQYDSKMNELLGTDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVVEELPSNVADLL* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 859048 863968 + Vvi4g79 Vvi4g79 784858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g79 413 PANTHER RNA HELICASE 22 413 - -
Vvi4g79 413 SMART ultradead3 59 256 IPR014001 -
Vvi4g79 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-11 22 413 - -
Vvi4g79 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Vvi4g79 413 Gene3D - 249 413 IPR027417 -
Vvi4g79 413 CDD SF2_C_DEAD 253 383 - -
Vvi4g79 413 Gene3D - 30 248 IPR027417 -
Vvi4g79 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Vvi4g79 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Vvi4g79 413 CDD DEADc_EIF4A 44 242 - -
Vvi4g79 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Vvi4g79 413 SMART helicmild6 293 374 IPR001650 -
Vvi4g79 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vvi4g79 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Vvi4g79 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g79 K03257 - vvi:100249159 816.994