Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g791 ATGGCCAAGTTTGGGGTCTTGGAAACTGATCCATCCATGGCAGCCAAGGCCACAGAGGAGCTGAAGAAGGAGTTGCAGAGGCTGGTGAGCAGAATTGTTGATGAAGATGAGAGCTGTGCTGACACCACTGATAAGGCTCTCAAAATTTTGTTTGCTTTGAGAGATTTCAAGTTCAAGGGGTCCCTTGATTTTGGGGTTGAAACGGAGAATCCGGCTCTGCCTCAGGAGTTCAGGTGCCCTATTTCCAAACAGCTCATGAGAGACCCTGTTGTGGTGGCCACTGGCCAGACATATGACAGGCCCTTCATTCAAAAATGGCTGAAAGACGGGCATAGGACTTGCCCCCGGACCCAACAAGTCCTCTCCCATACCATCCTCACCCCAAATAATTTGGTTCGAGAAATGATTTCAGAATGGTGCAAAGAACATGGGATTGAGCTTCCGAAGCCAGTTGAGGATGTCGATGAGGAAGTGATCACAGATGCAGACAGGGGGCACTTGAATTCGTTGCTTGAGAGGATGTCCTCTTCTGCTTCTGATCAGAAAGAGGCTGCAAGAGAGCTTAGGCTGCTCACAAAGAGGATGCCGTCATTTAGGGCCCTTTTCGGTGAATGCACTGATGCAGTTCCTCAGCTGCTCAGCCCGCTCTCACCAGATGCAGTGGATGTTGATCCTGAACTCCAAGAGGATTTGATCACCACAGTTTTAAATCTCTCGATACATGACAACAACAAGAAGCTAGTTGCAGAGGATCCAATGGCAATCCCCGTGCTCATTGAGTCCTTGAAGAGTGGAACCATTGAGACTAGGACCAACGCTGCTGCAGCCCTTTTCACATTATCAGCCCTTGATTCGAACAAGCTCATTATTGGGAAGTCAGGTGCTCTGAAACCTCTATTAGACTTATTGGAAGAAGGGCATCCATTAGCCATGAAAGATGTTGCCTCGGCCATATTTAATCTATGCATTGTCCTTGAGAACAAAGGGAGGGCTGTCCATGATGGGGCAGTCACAGTGATTCTGAAGAAGATCATGGATGGTATACTTGTTGACGAGCTATTGGCTATTCTCGCAATGTTGTCCAGTCATCAAAGGGCTGTTGAGGAGATGGGGGAGCTCGGAGCAGTTCCTTGCTTGCTTAGAATCATAAGGGAGAGCAAATGTGAGCGCAACAAGGAGAATTGTATTGCCATCCTGCACACGGTTTGTTTCAATGATCGAGCTAAATTGAGGGCAATCAGAGAAGAGGAAAATGACTATGGTACAATCTCGAGGCTGGCGCAGACTGGCACTTCGAGGGCTAAGAGGAAGGCCAACGGCATCCTTGAGAGGCTGAATAGAGTTGCTTTAATCACGCACACTGCATGA 1368 48.25 MAKFGVLETDPSMAAKATEELKKELQRLVSRIVDEDESCADTTDKALKILFALRDFKFKGSLDFGVETENPALPQEFRCPISKQLMRDPVVVATGQTYDRPFIQKWLKDGHRTCPRTQQVLSHTILTPNNLVREMISEWCKEHGIELPKPVEDVDEEVITDADRGHLNSLLERMSSSASDQKEAARELRLLTKRMPSFRALFGECTDAVPQLLSPLSPDAVDVDPELQEDLITTVLNLSIHDNNKKLVAEDPMAIPVLIESLKSGTIETRTNAAAALFTLSALDSNKLIIGKSGALKPLLDLLEEGHPLAMKDVASAIFNLCIVLENKGRAVHDGAVTVILKKIMDGILVDELLAILAMLSSHQRAVEEMGELGAVPCLLRIIRESKCERNKENCIAILHTVCFNDRAKLRAIREEENDYGTISRLAQTGTSRAKRKANGILERLNRVALITHTA* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15210733 15213343 + Vvi4g791 Vvi4g791 785570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g791 455 PANTHER U BOX DOMAIN-CONTAINING 6 453 - -
Vvi4g791 455 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Vvi4g791 455 CDD RING-Ubox_PUB 77 119 IPR045210 -
Vvi4g791 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
Vvi4g791 455 SUPERFAMILY RING/U-box 66 150 - -
Vvi4g791 455 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 453 - -
Vvi4g791 455 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Vvi4g791 455 Gene3D - 152 449 IPR011989 -
Vvi4g791 455 SMART arm_5 283 323 IPR000225 GO:0005515
Vvi4g791 455 SMART arm_5 241 282 IPR000225 GO:0005515
Vvi4g791 455 SMART arm_5 362 404 IPR000225 GO:0005515
Vvi4g791 455 Coils Coil 15 38 - -
Vvi4g791 455 SUPERFAMILY ARM repeat 167 445 IPR016024 -
Vvi4g791 455 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g791 - - vvi:100267223 889.026